| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_3847 |
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| Symbol | |
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| ID | 7092543 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylocella silvestris BL2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011666 |
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| Strand | - |
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| Start bp | 4211872 |
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| End bp | 4214805 |
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| Gene Length | 2934 bp |
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| Protein Length | 977 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 643467132 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_002364091 |
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| Protein GI | 217979944 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.0674028 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATGTCG TCATCGTCGA ATCGCCGGCG AAGGCTAAGA GCATTAATAA ATACCTCGGC
AAGGGCTATG AGGTTTACCC GTCCTATGGC CATGTCCGCG ATTTGCCGGC CAAGGACGGA
TCGGTCGATC CCGACGCCGA TTTCGCCATG CTGTGGGACG TCGACGTCAA ATCCGCCAAG
CGGCTGAACG AGATCGCAAG GGCCGTCAAG GACGCCGACA AGATCATTCT GGCGACCGAC
CCCGATCGCG AAGGCGAGGC GATCTCCTGG CATGTCCTCG AGGTTTTAAA GGCGAAGAAA
GTCCTCAAGG ACAAGCCGGT CGAGCGCGTC GTCTTCAACG CCATCACCAA ATCCGCCGTG
CTGGAGGCGA TGCAGCATCC GCGTCAGATC GACGTGGCGC TGGTCGACGC CTATCTGGCG
CGCCGCGCCC TGGATTATCT GGTCGGCTTC AATCTCTCAC CGGTGCTGTG GCGCAAGCTT
CCCGGCGCCC GCTCGGCGGG GCGGGTGCAG TCCGTCGCGC TGCGGCTTGT TTGCGACCGT
GAGCTTGAGA TCGAGGCTTT CGTCGCACGA GAGTATTGGT CGATCGTCGC CCATCTCAGG
ACGCAGGCGG ACGCCCCGTT CACGGCGCGG CTCGTTGGCG CCGACGGCAA GAAGATTACG
CGCCTCGACG TCGGGACCGG GGCTGAGGCC GCCGCCTTCA AGACCGATCT CGAAAACGCG
ACGTTCCGCG TCGCCGAGAT CGAGGCCAAG CCCGCCAAGC GCCACCCGTC CGCGCCTTTC
ACGACCTCGA CGCTGCAGCA GGAGGCCTCG CGAAAGCTCG GCTTCGCGCC GGCCCGCACC
ATGCAACTCG CGCAGCGGCT CTATGAGGGC GCCGACATCG ACGGCGAGAC GGTCGGACTC
ATTACTTATA TGCGAACGGA CGGCGTCGAT CTCGCCCCCG AGGCGATCAC CAGCGCAAGG
TCGGTGATCG CCCGCCAGTT CGGCGACGCC TATGTGCCGA AGGCGCCGCG CAAATATACG
GTGAAGGCCA AGAATGCGCA GGAAGCGCAT GAGGCGATCC GTCCGACCGA CCTCGCCCGC
CTGCCGCGCG CCGTCGCCCG CGCGCTGGAG CCGGATCAGG CCAAGCTCTA TGAGCTGATC
TGGACCCGCA CCATCGCCAG CCAGATGGAA TCGGCCGAGC TTGAGCGCAC CACCGTGGAC
ATTGAGGCGC TGGCCGGAGC GCGCAAGCTT GATCTGCGCG CAACCGGTCA GGTCGTGCGC
TTCGACGGCT TTCTCAAACT TTATCAGGAA GGGCGCGACG ACGAAGACGA TGACGAAAGC
GCCCGCCTGC CGGATATGGC CAAGGACGAG CGCCTGAAGC GCGAACGCAT CGAGGCGGAC
CAGCATTTTA CCGAGCCGCC GCCGCGCTTC ACCGAGGCGA CGCTGGTCAA ACGCATGGAA
GAGCTCGGCA TCGGCCGCCC CTCGACCTAC GCCTCGACGC TCGCCGTGCT GCGCGAACGC
GATTACGTGC GGATCGAGAA GAAGCGCCTG CATCCGGAGG ACAAGGGACG TCTCGTCACG
GCCTTCCTCG AGGCGTTCTT CGCCCGTTAT GTCGGCTATG ACTTTACCGC CGACCTTGAG
GAAAAGCTCG ACCGGGTCTC GAACCATGAG ATCGACTGGA AGCAGGTGCT GCGCGATTTC
TGGCTGGATT TTTCGGGCGC CCTCGCCGGC ACCAAGGATC TGCGCACGAC GGAGGTGCTC
GACCGCCTGA ACGAGATTTT GGGGCCGCAT ATTTTTCCGC CGAAGGAAGA CGGCTCCGAT
CCGCGCGGCT GCCCGTCCTG CGGCGAAGGC AAGCTGTCGC TAAAGCTCGG CAAATTCGGC
GCCTTCATCG GCTGCTCCAA CTATCCCGAA TGCAAATTCA CGCGGACCCT CGCTGCGCCC
GACGGCGCCG AGGCGAATGG AGGCGAGCGT CCGGGCGTCA AATCGCTTGG CGTCGATCCC
GACAGCGGCG AAGAGATCAC CCTGCGCGAC GGCCGCTTCG GCGTCTATGT GCAGCAGGGC
GAAGGCGAGA AGCCGAAACG CTCCTCCTTG CCGCCGACGA TCGCGCCCGC CGATCTGACG
CTCGAACAGG CGATCGCACT CTTGTCGCTG CCGCGCGAAG TCGCCCGCCA CCCCGAATCG
AAAGAGCCGA TCGTCGCCGG CATCGGCCGT TACGGGCCCT ATGTCCAGCA CGGCAAGACC
TACGCCAATG TCGCCAAGGA CGAGGACATC ATCTCGATCG GCGCCAATCG CGCGATCGAC
CTCATCGTCG CCAAGGAAAG CGGCCTCACC GGACGCCGGT TTGGCGCCTC CGAGAGCGCT
CCGGCCCGCG TTTTGGGCGA ACATCCCGCC GGCGGCGCGG TCAGCGTCAA GGCCGGGCGC
TATGGGCCTT ATGTTACGCA TGGCAAGATC AACGCGACCT TGCCGAAGGA GGCCGACCCC
ACCACATTGA CGCTTGAGGG CGCCGTGGCG CTGCTCGCCG CCAAAGCGTC GGGCGGCGGG
GCGCCGATGC AGGGCCGTCT TCTCGGCGAT CATCCGTCCG GCGGCCCCAT CACCGTGCGC
GCCGGCCGTT TCGGCGCCTA TGTCAATCAC GGCAAGACCA ACGCCACTTT GAAGCGCGAC
GCCTCCGCCG AAACCATCAC CCTCGAAGAA GCGATCCGGC TGATCGAGGA CAAGGAAGCG
GCGGGCGGCG GGCCAAGAAA AGCGGCCGCG CCGAAGAAGG CGGCCAAATC TTCGGCCGCC
GCCAAGAAGG CGGCGCCGAA TGCAAAAAAC AAAACCGCGC CGGCCAATGA CGAAGATCCG
CCATTCGAGC CGTCGCCCAA CCGAAAACCC GCCGCCAAGG CGGCCGCGGC GGCGCACAAA
AAACCCGCCG CCAAGGCCGC GGCGGCAAAA CTGAAACAGG CAAAACAAGC GTGA
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| Protein sequence | MYVVIVESPA KAKSINKYLG KGYEVYPSYG HVRDLPAKDG SVDPDADFAM LWDVDVKSAK
RLNEIARAVK DADKIILATD PDREGEAISW HVLEVLKAKK VLKDKPVERV VFNAITKSAV
LEAMQHPRQI DVALVDAYLA RRALDYLVGF NLSPVLWRKL PGARSAGRVQ SVALRLVCDR
ELEIEAFVAR EYWSIVAHLR TQADAPFTAR LVGADGKKIT RLDVGTGAEA AAFKTDLENA
TFRVAEIEAK PAKRHPSAPF TTSTLQQEAS RKLGFAPART MQLAQRLYEG ADIDGETVGL
ITYMRTDGVD LAPEAITSAR SVIARQFGDA YVPKAPRKYT VKAKNAQEAH EAIRPTDLAR
LPRAVARALE PDQAKLYELI WTRTIASQME SAELERTTVD IEALAGARKL DLRATGQVVR
FDGFLKLYQE GRDDEDDDES ARLPDMAKDE RLKRERIEAD QHFTEPPPRF TEATLVKRME
ELGIGRPSTY ASTLAVLRER DYVRIEKKRL HPEDKGRLVT AFLEAFFARY VGYDFTADLE
EKLDRVSNHE IDWKQVLRDF WLDFSGALAG TKDLRTTEVL DRLNEILGPH IFPPKEDGSD
PRGCPSCGEG KLSLKLGKFG AFIGCSNYPE CKFTRTLAAP DGAEANGGER PGVKSLGVDP
DSGEEITLRD GRFGVYVQQG EGEKPKRSSL PPTIAPADLT LEQAIALLSL PREVARHPES
KEPIVAGIGR YGPYVQHGKT YANVAKDEDI ISIGANRAID LIVAKESGLT GRRFGASESA
PARVLGEHPA GGAVSVKAGR YGPYVTHGKI NATLPKEADP TTLTLEGAVA LLAAKASGGG
APMQGRLLGD HPSGGPITVR AGRFGAYVNH GKTNATLKRD ASAETITLEE AIRLIEDKEA
AGGGPRKAAA PKKAAKSSAA AKKAAPNAKN KTAPANDEDP PFEPSPNRKP AAKAAAAAHK
KPAAKAAAAK LKQAKQA
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