| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_3846 |
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| Symbol | |
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| ID | 7092542 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylocella silvestris BL2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011666 |
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| Strand | - |
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| Start bp | 4209512 |
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| End bp | 4211875 |
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| Gene Length | 2364 bp |
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| Protein Length | 787 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 643467131 |
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| Product | ribonuclease R |
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| Protein accession | YP_002364090 |
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| Protein GI | 217979943 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.0372876 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAACAAAA TAGCCGGGAC AAGAAAGTCC GGCCAAAGCA GCGCCCCTCG GGCGCAGCAT
CAAGACGGCG CCGCCGAGGC GCAACAGGAG TCGGGCGGGG CGACGCCCAC CCGCGAAGAG
ATCATCGCCT TCATCGCCAG AGAGCGCGAG GCGCAATCCG GCGAAGGCGC GACGGGACGG
CGCCCGGCCA AGATCAGCAA GCGCGAAATC GCCCGCGCCT TCGATATCAA GGGCGCCGAC
CGCATCGCCC TCAAGCAGAT GCTGAAGGAG CTGGAGCAGG ACGGCGCCAT CGAGCGCCGC
CGCAAGGGAC TGCATCGCGC CGGACTCCTG CCGGTAACCG TGCTCGCCGA TTTCTACACC
CGCGATCGCG ACGGCGATTT TCTGGCGGCC CCGGTCAACT GGGACGAGGC CTCCGGCCGC
GCCCCGAAGA TTATCGTGCC CGTGTTGCAT CGCAAACGGC CCGGCGTTCC GCAGCCGGGC
ATCGGCGATC GCGCGCTGCT GCGCGTCGAG CCGATCCCGG ACGCCAAGCC GAACGAGCCC
TCTTACACTG GCCGCGTCGT CAAGCTGCTA GAACGGGCGA AAACGCAGAT CCTTGGCATT
TTCCGGCAAA ATCCCGGCGG CGGCGGACGC GTCGCGCCGA TCGACAAGAG AAACGCCAGC
CGCGGCGAAC TCGACGTCCT GCCGGGACAG GAGGGCGAGG CGCGCGACGG CGATCTCGTC
GCGGTCGAGA TGCTGCGCAC CGGCCGGCTT GGACTGACCT CGGCGCGGGT GCGCGAGCGC
ATCGGCGCGT TCGAAAGCGA AAGGGCGGTC AGCCTCATCG CCATCCATTC GCATAAAATC
CCGAATGTCT TCAGCCCCTC TGCGCTCACG GAGGCCGAAC AAGCCGGCGC CGCGGATATG
AGCGGGCGCG CGGACTGGCG CAAAATCCCC TTCGTCACCA TCGATCCGGC CGACGCCAAA
GACCATGACG ACGCGGTCGA GGCCGAGCCC GATCCCGACC CCGGCAACCC CGGCGGCTTC
GTCCTGCGCG TCGCCATCGC CGACGTCGCC GCCTATGTGC GGCTCGGTTC GGCGCTTGAC
CGCGAAGCGC TCACGCGCGG CAATTCGGTC TATTTTCCCG ATCGCGTCGT GCCGATGCTG
CCAGAGCGGA TCTCCAACGA TCTCTGCTCG CTGCGCCCGC GCGAGGACCG CCCGGCTCTC
GCTGCGCGCA TCGTCATCGC CGCCGACGGG CATAAACTCA GCCATGATTT CCATCGCGTG
ATGATCAGGT CCGAGGCGAA GCTTTCCTAC CCGCAGGCGC AGGCCGCCAT CGACGGCGCG
CCGGACGAGA CGACCGGCCT GCTGGTCGAG CCCGTTCTTG CGCCGCTCTA TGACGCCTAT
GCGGCGCTGA AGCGCGCGCG GGACCAGCGC TCGCCGCTCG AGCTTAATCT GCCGGAGCGC
AAGATCCTGC TGAACACGGA GGGCACAGTC GACCGGGTGG TGATCCCCGA ACGGCTCGAC
GCGCATCGGC TGATCGAAGA GTTCATGATC CTCGCCAATG TCTGCGCAGC GGAGACGCTC
GAGGCCAAGC GTCAGCCGCT GATCTATCGC GCCCATGACG AGCCCTCGCT CGAAAAGCTG
AATAATCTTG CGGAATTTTT GAGCACGATC GGCATCAAGC TGGCGAAGGG CCAGGTGCTG
CGGCCGGAGC AATTCAACGG CATCCTGGCG CAGGTCCGAG ACACCGAGAA TGAGCATCTC
GTCAATGAAA TCGTGCTGCG CACGCAGGCG CAGGCCGAAT ATGTCGTCGA GAATTACGGA
CATTTCGGCC TCAATTTGCA CCGCTACGCG CATTTCACCT CGCCGATCCG GCGCTATGCC
GATCTGATCG TTCACCGCGC CCTGATTGCG GCGCTGGACC TTGGAACGGA CGGGCTTACG
CCGGCCTCCC GCGCCGAACT GCCGGAGATT GCGGCGCAGA TCTCGGCCGC AGAGCGGCGC
GCCATGGCCG CCGAACGCGA GACGGTCGAG CGCCTGATCG CCGCCCATCT CGCCGACAAG
ATCGGCGCGA GTTTCGAGGG CCGCATTTCA GGCGCGACCC GCGCCGGGCT GTTCATCCGG
CTGGCCGACA CGGGCGCCGA CGGATTTATT CCGGCGAGCA TGCTGGGCGA TGATTATTTT
CGTCACGACG AACGGCTGCA TGCGCTGGTC GGGTCGCGCA CCGGCAAGAT GCATCGGCTC
GGCGACATCG TCACGGTGAA GCTGGTCGAG GCGGCGCCCC TCGCCGGCGC TCTGCGGTTC
GAGATGGTGA CCGGAGGCGC GCCAGGCGCC CGCGCGCCAA AGGCGGCCGC CAAGCGCGCA
GCGAAAAAAT ACGGCCGACG CTAA
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| Protein sequence | MNKIAGTRKS GQSSAPRAQH QDGAAEAQQE SGGATPTREE IIAFIARERE AQSGEGATGR
RPAKISKREI ARAFDIKGAD RIALKQMLKE LEQDGAIERR RKGLHRAGLL PVTVLADFYT
RDRDGDFLAA PVNWDEASGR APKIIVPVLH RKRPGVPQPG IGDRALLRVE PIPDAKPNEP
SYTGRVVKLL ERAKTQILGI FRQNPGGGGR VAPIDKRNAS RGELDVLPGQ EGEARDGDLV
AVEMLRTGRL GLTSARVRER IGAFESERAV SLIAIHSHKI PNVFSPSALT EAEQAGAADM
SGRADWRKIP FVTIDPADAK DHDDAVEAEP DPDPGNPGGF VLRVAIADVA AYVRLGSALD
REALTRGNSV YFPDRVVPML PERISNDLCS LRPREDRPAL AARIVIAADG HKLSHDFHRV
MIRSEAKLSY PQAQAAIDGA PDETTGLLVE PVLAPLYDAY AALKRARDQR SPLELNLPER
KILLNTEGTV DRVVIPERLD AHRLIEEFMI LANVCAAETL EAKRQPLIYR AHDEPSLEKL
NNLAEFLSTI GIKLAKGQVL RPEQFNGILA QVRDTENEHL VNEIVLRTQA QAEYVVENYG
HFGLNLHRYA HFTSPIRRYA DLIVHRALIA ALDLGTDGLT PASRAELPEI AAQISAAERR
AMAAERETVE RLIAAHLADK IGASFEGRIS GATRAGLFIR LADTGADGFI PASMLGDDYF
RHDERLHALV GSRTGKMHRL GDIVTVKLVE AAPLAGALRF EMVTGGAPGA RAPKAAAKRA
AKKYGRR
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