| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_3103 |
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| Symbol | |
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| ID | 7092781 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylocella silvestris BL2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011666 |
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| Strand | + |
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| Start bp | 3407813 |
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| End bp | 3408823 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643466413 |
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| Product | DNA polymerase LigD, ligase domain protein |
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| Protein accession | YP_002363374 |
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| Protein GI | 217979227 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 78 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAGT CCCCGCCAGC AAAGCCGCGC TCGATCAGCT GCAAGACAGA TGTCGTCGCG
GATGGGTTGA GGAGTCGGCC GCTTGTCTCG GCTGATCCGA CAGTCCCCCA GCTCTTCGAT
GCGCCGCTGC CGGGCTGGAT CGCGCCCTGT TTGCCGACGC TCGTCCCCAA GCCGCCGGCC
GGCGAAGAAT GGGTTCACGA AATCAAATGG GACGGCTATC GGGTTTCAGC TTACGTCGAG
CCAGGCGCCG TCACGATCCG CACGCGCAAC GGCTATGATT GGACGGCGAG ATTTCCGACG
ATCGCCGCTG CGCTCGGCAA GCTGAAGGTG CGGTCGCTGG TTATCGACGG CGAGGCGAGC
GTGCTCGACG AGAAAGGCCG TTCGAGCTTC GCCGAGCTGC AAGCCGACCT TGCAACGGGC
GGCGCGCAAC GAGCCGTGCT TTACGCCTTC GATCTGCTTT TCCTCGATGG GGAAGACTGG
CGCCAGCGGC CGCTAGACGA GCGGCGCGGG GCCTTGGCCG GCCTGATCAA GAAAAAGCCG
CCGCTGCTTC TCAGCCAGGA ATATGCCGGA ACTGGCGTCG ATTTTTTCAA GGTCGCTTGC
GAGCATGAGC TCGAAGGGAT CGTCTCGAAG CGCCTCGACA AGCCTTACCG ATCCGGCCGC
AGCAAGGATT GGCTGAAGAC CAAATGCGTG CAGAGCGGGG AATTTGTCGT GATCGGCTAT
CAGCCCTCGT CCGGCGCGGT CCGGGCGCCC CTGGCCAATA TCAAGGTCGC GCGATGGGAA
GAAGGCGCGC TGCGCTACGC GGGAGCAGTG GGAACAGGCT TCAGCGAGCG CGTCGCCAGG
ATGCTGCGCG ACAGGCTTGA CGGCCTCAGG ACGCCGCGCT GTGCGATCCC AAGGCTCAAG
GTTGGGGGCG CAGTTTGGAC GAAGCCCGAT CTCATCGTTG AGATTGATTA TCGCGGCCTC
ACTGCGGACG GCGAGCTTCG CCATGCGAGC TTTCGCGGGA TCGCAGAATG A
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| Protein sequence | MAKSPPAKPR SISCKTDVVA DGLRSRPLVS ADPTVPQLFD APLPGWIAPC LPTLVPKPPA
GEEWVHEIKW DGYRVSAYVE PGAVTIRTRN GYDWTARFPT IAAALGKLKV RSLVIDGEAS
VLDEKGRSSF AELQADLATG GAQRAVLYAF DLLFLDGEDW RQRPLDERRG ALAGLIKKKP
PLLLSQEYAG TGVDFFKVAC EHELEGIVSK RLDKPYRSGR SKDWLKTKCV QSGEFVVIGY
QPSSGAVRAP LANIKVARWE EGALRYAGAV GTGFSERVAR MLRDRLDGLR TPRCAIPRLK
VGGAVWTKPD LIVEIDYRGL TADGELRHAS FRGIAE
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