Gene Msil_2886 details

Gene Information

• Locus tag: Msil_2886
• Symbol: rimM
• ID: 7092803
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylocella silvestris BL2
• Kingdom: Bacteria
• Replicon accession: NC_011666
• Strand: +
• Start bp: 3181364
• End bp: 3181963
• Gene Length: 600 bp
• Protein Length: 199 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 643466197
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_002363165
• Protein GI: 217979018
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 34
• Fosmid unclonability p-value: 0.0689866
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGATCGGC AGACTTCGGA TCGGAAAACC GCGGACCGGC TGGTGCTGAT CGGCCGGTTC 
GGCGCCCCCC ATGGCGTCAG GGGCGAGCTG CGGCTGCAGA GTTTTACGGA AAATCCGGCC 
GCGATTTCAT CCTATGGGCC GCTCACCGAC AGACTGGGGG CGAAAGCCTT CTCGATTTTG 
ACCGCGCGAG CCGTCAAGCC CGATTTGTTT GTCGTCAAGC TCAAAGGCGT CGACGACCGG 
ACCGCCGCCG AGGCCTTGAC CAATGTCGAG GTTTTTGTCG CGCGCGAAAA ATTGCCGGCC 
GCGGCGGAAG ATGAGTTCTA TCTCGCCGAT CTGATCGGTC TTGAGGCGCT GGACGCCTCG 
CGCGCGCCGT TTGGACGCGT CAAGAATGTC CTCGATTTTG GGGCGGGCGA CATCCTTGAA 
ATCGAACCTG CGGGCGGTGG CGAAACGCTG CTGCTGCCGT TCACGCGGCA GGTCGCGCCG 
GAAATCGATC TCGCCGCGGG CTTCATCGTG ATCGATCCGC CGGTCGAACG CGCGGCTCCG 
GCGTTTTTGC AGAACGACGA GACGGACGCC GCGGCATCGC CGCCGCCTTC GGCCTCATAG 

 

Protein sequence

MDRQTSDRKT ADRLVLIGRF GAPHGVRGEL RLQSFTENPA AISSYGPLTD RLGAKAFSIL 
TARAVKPDLF VVKLKGVDDR TAAEALTNVE VFVAREKLPA AAEDEFYLAD LIGLEALDAS 
RAPFGRVKNV LDFGAGDILE IEPAGGGETL LLPFTRQVAP EIDLAAGFIV IDPPVERAAP 
AFLQNDETDA AASPPPSAS