Gene Msil_2593 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsil_2593 
Symbol 
ID7093247 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylocella silvestris BL2 
KingdomBacteria 
Replicon accessionNC_011666 
Strand
Start bp2832872 
End bp2834698 
Gene Length1827 bp 
Protein Length608 aa 
Translation table11 
GC content63% 
IMG OID643465908 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_002362878 
Protein GI217978731 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.0703266 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGGCGC CAAAGAGGAA ATTCAAGTTC GACCCCGATT CGATCGGAAA GGCCGGGCCG 
GTGAAATCCA TCGCGGAGGC GGGGCGCCGC GCGTCAGGCG ATCTCGTCGC AAAGACCTTG
GCGAATACCG GCGACCTCAA AGCGCAGGAC GAATCGTTTA GGCTGCTGTT CGAGGGCGGC
CCTATCCCCA CGGCTTTGTG CGATCCGGAG TCGGCGCGAT TTCTCGTCGT CAATGACGCG
GCGGCCGCGC TGTGGGGGTT TTCGGCGTCC GAGTTGCTGG CGATGACGGC TTTCGACATC
ACGCCCGAGG AGGATTGGGA GGAGGTGCGG GCCTTTGCAA CGCGCGATCC GGAAAGCGCG
GCGAACCCGC GCGTCGGTCG CCATCTCAGA TCCGACCGAA GCGTGATCCA CGTCGTCGTG
CATTCCCGCG CGATCGTCTT TCGCGACGGC CCGGCCATTC TCGTCACCAT CATAGACGTC
ACGGACAAGC AGCGCGCCGA GCTTCGACTG GCGCATCTTG AGCATCATGA CGCGCTGACA
GATCTGCCCA ATCGCGCGCT CTTCCGCATC AGGCTCGACG AGGCTTTGTC GCGTCTCGAC
TCCGGGCAGG GTGAAATCGC CGTGCTTTAT CTCGATCTGG ATCAGTTCAA GGCGATCAAC
GACACGCTTG GCCACACGGT CGGCGACGCG CTGCTTCGCG CTGTCGCGGA TCGGCTGCGC
GCCTGTCTGC GCCCGGGCGA TACGCTGGCG CGTTTCGGCG GGGACGAATT CGCTTTTCTC
TGCGGGCGCC TTGCCGGACC GGATGAAGCC GGCAAGCTCG CCTCTTTGAT TGTGGATGAG
GTGGGCGGCC CCTATGTCAT CCAGGGTCAT TGCGTCGAAA TCGGCGCCAG CATTGGCGTT
GCGATGGCCC CCGGGGACGG GCGCGACTCG GATTTGCTCC TGAAACACGC GGATATGGCG
TTGTACCGGG CGAAAGAAGA GGGACGGCGC GCGTTTCGCT TCTTCGAGCC CGAGATGGAC
GCGCGGGCGC AGGCGCGGCG ACAGCTTGAG GCCGATCTTC GCCAAGCTCT CATCGCCTCC
GAGTTCGAGC TGCATTATCA GCCCCTCGTC GCCTTGCAGA CGGGCGCCAT CACCGGGTTC
GAGGCGCTGT TGCGGTGGCG CCATCCGATC CGCGGCATGA TTCCCCCGGC CGCCTTCATA
GGCCTTGCGG AAGAAACCGG CCTGATTGTC CCGCTTGGCG AATGGGCGCT GCGCCAGGCT
TGCGCCGAGG CGGCGAAATG GCCCAATCAT CTCAAGGTCG CCGTCAATCT GTCGTCAGTG
CAATTCAAGC GCGGCGATCT GATCCATTCG GTGCTGACCG CGCTCGCCAA TTCCGGGCTG
CCCGCCTCGC GGCTTGAGCT TGAGATCACC GAATCGATCC TGCTCGCTGA GAGCGAAGCC
AATCTCGCGA CCCTGCACAG AATGCGCAGC CTCGGGGTCA GCGTATCGAT GGATGATTTT
GGCATCGGCT ATTCGAGCCT TAGCTATTTG CGCGCCTTCC CTTTCGACAA GATCAAGATC
GACCGTTCCT TTGTGAGCGA ACTTGGCCAT GGATGCGGCT CCAGGGCGAT CGTGCGCGCC
GTCGCGGGCC TTGGCTCCAG CCTTGGCGTT TCGACAACGG CGGAAGGCGT CGAGACGAGC
GAGCAACTCG CTTGGCTTCG CGCCGAAGGC TGCACGGAAA TGCAGGGCTT TTACTTCAGC
CCCCCGGTGC CCGCCAGCAA GATTGCGCCA ATGTTAAAGG CCAATGAAAC CGCCGATCCC
CGATTCGCGC CTTTGCTCAA GCATTAG
 
Protein sequence
MAAPKRKFKF DPDSIGKAGP VKSIAEAGRR ASGDLVAKTL ANTGDLKAQD ESFRLLFEGG 
PIPTALCDPE SARFLVVNDA AAALWGFSAS ELLAMTAFDI TPEEDWEEVR AFATRDPESA
ANPRVGRHLR SDRSVIHVVV HSRAIVFRDG PAILVTIIDV TDKQRAELRL AHLEHHDALT
DLPNRALFRI RLDEALSRLD SGQGEIAVLY LDLDQFKAIN DTLGHTVGDA LLRAVADRLR
ACLRPGDTLA RFGGDEFAFL CGRLAGPDEA GKLASLIVDE VGGPYVIQGH CVEIGASIGV
AMAPGDGRDS DLLLKHADMA LYRAKEEGRR AFRFFEPEMD ARAQARRQLE ADLRQALIAS
EFELHYQPLV ALQTGAITGF EALLRWRHPI RGMIPPAAFI GLAEETGLIV PLGEWALRQA
CAEAAKWPNH LKVAVNLSSV QFKRGDLIHS VLTALANSGL PASRLELEIT ESILLAESEA
NLATLHRMRS LGVSVSMDDF GIGYSSLSYL RAFPFDKIKI DRSFVSELGH GCGSRAIVRA
VAGLGSSLGV STTAEGVETS EQLAWLRAEG CTEMQGFYFS PPVPASKIAP MLKANETADP
RFAPLLKH