Gene Msil_2357 details

Gene Information

• Locus tag: Msil_2357
• ID: 7090341
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylocella silvestris BL2
• Kingdom: Bacteria
• Replicon accession: NC_011666
• Strand: -
• Start bp: 2565212
• End bp: 2567071
• Gene Length: 1860 bp
• Protein Length: 619 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643465679
• Product: type VI secretion system Vgr family protein
• Protein accession: YP_002362649
• Protein GI: 217978502
• COG category: [S] Function unknown
• COG ID: [COG3501] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR01646] Rhs element Vgr protein; [TIGR03361] type VI secretion system Vgr family protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 34
• Fosmid unclonability p-value: 0.116837
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACTTCCG AACTGACCCA AGACAAACGC GTCGCCTCGC TTGAGACGCC TCTCGGCAAG 
GACAAGCTCG TCTGCCTGCG CTTCGACGGC GCCGAAGGCT TGAGCGAATT GTTCGAATAT 
CGCGTCGAGG CGCTGAGCAC CGAGGCGAAT GTCGATTTCG ACAAGGCGAT CGGCAATAAT 
TGCTCGGTCA CGTTCAAATC CTATTCCGAT CCCGATCGCG TCTTCAACGG CGTCCTCGTC 
GAGGCGCAGG CTCTCGGCGC GCAAGCTGGC CTCAATCTCT ACAGGCTGAC GCTAAAGCCC 
TGGCTGTGGC TGTTGTCGCG CACGAGCGAC TGCCGCATCT TCGAGAATCA GACGGCGGTC 
GACATCATCA AGAAGGTGTT TTCCGACCGC GGCTTCTCCG ACTACAGGGT TGCGACGACG 
GGCAAGTTTC CGGAGCTCGA ATATTGCGTC CAGTATCGCG AGACCGACCT CGCCTTCGTC 
TCAAGGTTGA TGGAGCAGCA CGGAATCTAC TATTTCTTCG AGCATCAGAA GGACAAGCAC 
ACGCTGGTGC TGGCCGACGC CAAATCGTCG CACAAGCCGG TTCCCGGCCA CGCCGAGACG 
CCCTTCATCG GCGATGAGCG GCAGACGCGG CGCGAGCGCG AGCATATTTC AAAGTGGACG 
CCCGAGCGCC GCTTCCGCAG CGGCAAGTTT GAGCTCAACG ATTATGATTA TCTGCAGCCG 
AACGCCGATC TGAAAAGCGA CGCCGAAGGG CAAGCGTCCT ACACCAAGTC GAAGATGGAG 
ATCTACGACT ATCCCGGCAA ATTCAAAAAG AAGAATGACG GCGAGACCTA TGCGAAGGTC 
AGGCTGCAGG CGGAGCAGGC GATGGACAAG CGCCGCTACG CCGACGGCGA TTCGGTCAGC 
CTCTTGCCAG GCGGCCTGAC GACGCTGAAG GATCATCCGG AAGGCGGCGA GAACAAGGAA 
TATCTCGTTC TGCGCGCGCT CCATTCTTAT TCGTCGCAAG CCTACAGGTC CGGCGGTTCG 
CAGGGAGCGG ACCTTTATTC CGGACGTTAC GAGCTGTTGC CGAGCGACGT CAATTACCGC 
GCGCCTTTGG CGACGCCGCG GCCGATCGTC TACGGGCCGC AGACGGCCAA GGTGGTTGGC 
AAGGACGGCG AGGAAATCGA CGTCGACGAG CACGGCCGCA TTCTTGTGCG CTTCTACTGG 
GACCGCAAGA ACAAGCAGTC GTGCCGCGTC CGCGTCGCGC AGGTGTGGGC CGGCAAGGGC 
TGGGGCGGCC AGGCGATTCC GCGCATCGGC CAGGAAGTCG TCGTCGAGTT TCTCGAAGGC 
GATCCCGATC GCCCGCTCGT CACCGGCGCC GTCTACAATG GCGACAACAA ATACCCGTAT 
GAAATGCCCG CCAACAAGAC GCAATCCGGG CTCAAGTCGG ATTCCTCGAA AGGCCATGGC 
GGCTACAATG AATTTATGTT CGAGGACAAG AAGGGCTCGG AAAAAATCCG GATGCATGGC 
GAGCGCGATC ATGAGGTCGT CATCCGCCGC GCCGAGACGA AAGAGGTCGG CGAGATCTTT 
TCAAGCCGCA GCGATCCCTC GCGCGACACC ACACTGAAGA ACGGCAGCGA CAATCTGTCG 
ATCCAGAACG GCAACCAAAC GGTCGACATC AAGGGCAAGC AGGACGTCAG CGTGCTCGAG 
ACGATCAGCA TCGAGGCGAT CCAGAAGATC ACGCTGACGG TCGGCGCCAG CACGATCACC 
ATGGAGCCGG CGCAGATCAC GATCAATTCG CCGATGATCA CCGTGCAGTC GTCTCTGGCG 
ACCAAGATTT CCGGCGGCAT GGCGATCAAT CTCGACGCCG CGATCATCAA GATCAATTGA 

 

Protein sequence

MTSELTQDKR VASLETPLGK DKLVCLRFDG AEGLSELFEY RVEALSTEAN VDFDKAIGNN 
CSVTFKSYSD PDRVFNGVLV EAQALGAQAG LNLYRLTLKP WLWLLSRTSD CRIFENQTAV 
DIIKKVFSDR GFSDYRVATT GKFPELEYCV QYRETDLAFV SRLMEQHGIY YFFEHQKDKH 
TLVLADAKSS HKPVPGHAET PFIGDERQTR REREHISKWT PERRFRSGKF ELNDYDYLQP 
NADLKSDAEG QASYTKSKME IYDYPGKFKK KNDGETYAKV RLQAEQAMDK RRYADGDSVS 
LLPGGLTTLK DHPEGGENKE YLVLRALHSY SSQAYRSGGS QGADLYSGRY ELLPSDVNYR 
APLATPRPIV YGPQTAKVVG KDGEEIDVDE HGRILVRFYW DRKNKQSCRV RVAQVWAGKG 
WGGQAIPRIG QEVVVEFLEG DPDRPLVTGA VYNGDNKYPY EMPANKTQSG LKSDSSKGHG 
GYNEFMFEDK KGSEKIRMHG ERDHEVVIRR AETKEVGEIF SSRSDPSRDT TLKNGSDNLS 
IQNGNQTVDI KGKQDVSVLE TISIEAIQKI TLTVGASTIT MEPAQITINS PMITVQSSLA 
TKISGGMAIN LDAAIIKIN