| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_1627 |
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| Symbol | |
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| ID | 7090984 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylocella silvestris BL2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011666 |
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| Strand | + |
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| Start bp | 1758760 |
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| End bp | 1760811 |
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| Gene Length | 2052 bp |
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| Protein Length | 683 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643464952 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_002361937 |
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| Protein GI | 217977790 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.00680574 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGAAGA AGGATAACGA AAAGACCGAG GCGGAAGGCG GCGTGGTCGA GACCGCGGAC
AGCCCCCTGC TCGATCTGTC CGACGCCGCC GTCAAGCGGA TGATCAAGGC CGCCAAGAAG
CGCGGCTTCG TCACCTATGC CGAATTGAAC GCCGTGCTTC CGTCCGAGGA AGTCAATTCG
GAACAGATCG AAGACATTCT GGCGATGCTC AATGAAATGG GCATCAATGT CGTCGAGACC
GAAGAGCAGG AAGAAGGCGA AGCCGAGGAA GCCGCCGAGG AAGAGGAAGC CGAAGGCGGC
GATCTCGTCG AGGCCTCGAC CGTGAAAGCC GTCACGGTCC GCTCCTCCGA GCCCGCTGAC
CGCACCGACG ATCCGGTGCG CATGTATCTG CGCGAGATGG GCTCGGTCGA GCTTTTGTCG
CGCGAGGGCG AAATCGCGAT CGCCAAGCGC ATCGAGGCGG GACGCGAGGC GATGATCGCT
GGACTTTGCG AAAGCCCGCT GACGTTTCAG GCCATCATCA TCTGGCGCGA CGAATTGAAC
GACAGCAAGG TTCTGCTGCG CGACATCATC GATCTCGAGG CGACCTACGC GGGCCCGGAC
GGACGCAATA CGCCGAAAAT CGACATGACT GCTCCCGGCG CCGCCGAGGC CCTCGCCGCG
CAGCAGGCCG CGCCGGCCAC TGCGCCGCTG ACGCCGCCCG CGCGTCTTCG CCCCGCCGGC
GAAGATGGCG TAGATCCGCC GATCCCCGAG GACGTCTTCG ACGAAGAAGA CGATATGGAG
AATTCCGTCT CCCTCTCGGC GATGGAGGCC GAGCTGAAGC CGAAGGTGCT CGACACCTTT
GATCGCGTCG CCGACGCCTA TAAGAAGCTG CGCCGGCTGC AGGACCAGAA CGTCGAGAAC
AAGCTGAAGA ACGAGTCGCT GTCGCCCTCG CAGGAGCGCA AATATAAAAC GCTCAAGAAA
GAGGTCGTCA CCGACGTCAA ATCGCTGTCG CTCAATCCGA ACCGGATCGA GGCGCTGGTC
GAGCAGCTCT ACGACATCAA CAAGCGCCTG ATCGGACTCG AGACGCGGCT TTTGCGGCTG
GCCGAGGGCT CCGGGGTCAC GCGCGAAGAT TTCTTGCGCA ATTACCAGAA TTCCGAGCTC
GATCCGAAAT GGCTGCTGCG CGTCTCGAAG CTTGGCGGGC GCGGTTGGCG TGATTTCGTC
GCGACCGCCA AGGATCAGAT CAAGGATCTG CTCGCCGAAA TCCATGCGCT CGCCACGGAA
ACCGGACTCG AAATCCAGGA ATTCCGCAAG ATCGTGCATA TGGTGCAAAA GGGCGAGCGC
GAAGCCCGGC AGGCGAAAAA GGAAATGGTC GAGGCCAATC TTCGCCTCGT CATCTCGATC
GCCAAGAAAT ACACCAATCG CGGCCTGCAA TTCCTCGACC TCATCCAGGA AGGCAATATC
GGCCTGATGA AGGCGGTCGA TAAATTCGAA TATCGCCGCG GCTACAAATT CTCGACTTAC
GCGACGTGGT GGATCCGGCA GGCGATCACC CGCAGCATTG CGGATCAGGC CAGAACGATC
CGCATTCCGG TCCATATGAT CGAGACGATC AACAAGATCG TGCGCACCTC GCGACAGATG
CTGCATGAGA TCGGCCGCGA GCCGACGCCT GAAGAACTCG CCGAAAAGCT CGCCATGCCG
CTTGAGAAAG TGCGCAAGGT TTTGAAGATC GCCAAAGAGC CGATCTCCCT CGAAACGCCG
ATCGGCGATG AGGAAGATTC GCATCTTGGC GATTTCATCG AAGACAAGAA CGCGATTTTG
CCGATCGACG CCGCGATCCA GTCCAATCTG CGCGAGACGA CGACCCGTGT GCTCGCCTCG
CTGACGCCGC GCGAGGAGCG CGTCCTGCGC ATGCGCTTTG GCATCGGCAT GAACACCGAT
CACACGCTGG AGGAAGTCGG CCAGCAGTTT TCGGTGACGC GTGAGCGCAT CCGGCAAATC
GAGGCAAAGG CGCTGCGCAA GCTGAAGCAT CCGTCGCGAT CGCGCAAACT GCGCAGCTTC
CTCGACAACT AA
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| Protein sequence | MAKKDNEKTE AEGGVVETAD SPLLDLSDAA VKRMIKAAKK RGFVTYAELN AVLPSEEVNS
EQIEDILAML NEMGINVVET EEQEEGEAEE AAEEEEAEGG DLVEASTVKA VTVRSSEPAD
RTDDPVRMYL REMGSVELLS REGEIAIAKR IEAGREAMIA GLCESPLTFQ AIIIWRDELN
DSKVLLRDII DLEATYAGPD GRNTPKIDMT APGAAEALAA QQAAPATAPL TPPARLRPAG
EDGVDPPIPE DVFDEEDDME NSVSLSAMEA ELKPKVLDTF DRVADAYKKL RRLQDQNVEN
KLKNESLSPS QERKYKTLKK EVVTDVKSLS LNPNRIEALV EQLYDINKRL IGLETRLLRL
AEGSGVTRED FLRNYQNSEL DPKWLLRVSK LGGRGWRDFV ATAKDQIKDL LAEIHALATE
TGLEIQEFRK IVHMVQKGER EARQAKKEMV EANLRLVISI AKKYTNRGLQ FLDLIQEGNI
GLMKAVDKFE YRRGYKFSTY ATWWIRQAIT RSIADQARTI RIPVHMIETI NKIVRTSRQM
LHEIGREPTP EELAEKLAMP LEKVRKVLKI AKEPISLETP IGDEEDSHLG DFIEDKNAIL
PIDAAIQSNL RETTTRVLAS LTPREERVLR MRFGIGMNTD HTLEEVGQQF SVTRERIRQI
EAKALRKLKH PSRSRKLRSF LDN
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