| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_1487 |
|---|
| Symbol | |
|---|
| ID | 7091830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylocella silvestris BL2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011666 |
|---|
| Strand | - |
|---|
| Start bp | 1604282 |
|---|
| End bp | 1604962 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643464818 |
|---|
| Product | conjugal transfer protein TrbF |
|---|
| Protein accession | YP_002361804 |
|---|
| Protein GI | 217977657 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3701] Type IV secretory pathway, TrbF components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 98 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAGC GATCGTCGGT GCGCTACGGC CGCACGCCCG CACCCGAAAC GCCCTATCAG
AAAGCCGCGC AGGTCTGGGA CGAGCGCATC GGCTCGGCCC GCGTCCAGGC CAGGAACTGG
CGGCTGATGG CGTTTGGTTC GCTCTTCCTG TCGGCGGGCC TCGCCTTCGG CCTCGTCCGG
CAATCAGCCA CCGGCACGAT CGTCCCCTGG GTGGTGGAGG TCGACAAGCT CGGCGAGGCG
CAGGCGATCG CGCCGGCCGA GGCCGACTAC ACGCCGGGCG ATCCGCAGAT CGCCTGGCAT
CTCGCTCGCT TCATCGAGGA GGTCCGCTCG ATCGCGGCCG ATCCGATCAT TGTGCGGCGG
AACTGGCTGC GCGCCTATGA CTTCACCACG GCGAGCGGCG CGATGGCGCT CAACGACTAT
GCCCGCGCCG ACGATCCCTT CACTAAGATC GGCAAGCAGC AGATCGCCGT CGACGTCTCG
AGCGTGATCC GCGCCTCGCC CGACAGCTTT CGCGTCGCCT GGACTCAGCA CCGCTACCAG
GACGGCGCGC TCGCCGAGAC GTGGCGCTGG ACCGCCATTC TGACCATCGC GATCCAACCG
CCGCGCGACG CCGAGCGGCT GCGCCAAAAT CCGCTCGGAA TCTTCATCAA CGCCATCAAC
TGGTCGAAGG AGCTCGGCTG A
|
|---|
| Protein sequence | MFKRSSVRYG RTPAPETPYQ KAAQVWDERI GSARVQARNW RLMAFGSLFL SAGLAFGLVR
QSATGTIVPW VVEVDKLGEA QAIAPAEADY TPGDPQIAWH LARFIEEVRS IAADPIIVRR
NWLRAYDFTT ASGAMALNDY ARADDPFTKI GKQQIAVDVS SVIRASPDSF RVAWTQHRYQ
DGALAETWRW TAILTIAIQP PRDAERLRQN PLGIFINAIN WSKELG
|
|---|
| |