| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_1254 |
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| Symbol | |
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| ID | 7091263 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylocella silvestris BL2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011666 |
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| Strand | + |
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| Start bp | 1347718 |
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| End bp | 1350615 |
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| Gene Length | 2898 bp |
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| Protein Length | 965 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 643464595 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_002361585 |
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| Protein GI | 217977438 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCAGG GTTTTGCAGC GCTGGGCCGC TGCCTTTTCC TGCTCTGTGC GCTCGCGCTG
ACGCTGGCCG GCGCGCTCGG CCCGGCGAAC GCGATCGAAT CGGTGCGCGT GCCGCTCGAT
TCGCAAGTGA TCGACCTGAC CAAGGCCGTC GAAAGCTATA ATTCCGATGG CGACCGCCTG
CTCGTCTCGA CGGCGCCGGG CTCGGACGGC ATCGTGCGGC GCATCGAAGT CCGGGCGCGC
GAAGAAGGGA CGCGACCCAA CTGGATCGTG TTCGCGCTGA CCAACGACAC CAGCGAGCAG
ATTGAACGGC TGATCGTCGC GCCGCATTTC CGGCTCGTCG GCTCGGGCGT GATCTGGCCC
GACCTCGGGG CGACGCGCAT TTCCGCGATC ACCGCCAGCC AGGGCTTTCC GCCGGAGCGT
GAAGACAGCG AAGACGCCGA CGTGTTCCGT CTGACGCTCG ATCCCGGCAC CACCATCACC
TATGTCGCAG AATTGCGCAC CCCGAACCTC CCGCAGCTGC ACCTTTGGGA GCCCGACGCC
TATAAGGACC GGATGACGAG CCTTGCCCTC TATAAGGGCA TCATCATCGG CGTCGCCGGC
CTGCTCGCCC TGTTTTTGAC CATCGTCTTC GTCGTCCGCG GCGCCGTGAT TTTTCCCGCA
GCCGCCGCCC TCGCCTGGAC GGTGCTCGCC TATGTCTGCA TCGATTTCGG CTTCTGGGGA
CGGATCATTG GCTCGGAGGG ACAATCGGAC CGCATCTGGC GCGCCGGCAC GGAATCGATC
CTCGCCGCGA CGCTGCTGGT GTTTCTCTTC GCCTATTTGA ATCTCAACCG CTGGCATGTG
CGCGCCTCCC ATGTCGCCGC CATCTGGCTG ATCTTCCTTG CCGCTCTCGT TGGGCTTTCC
GTCTATGACG CGCCGGTCGC CGCCGGCGTC GCGCGCATTT CCATCGCGAC GATCGGCGCC
GTCGGCTTCG TGCTGGTGCT CTATCTTGCG ATCCACGGCT ACGACCGGGC GGTGATGCTG
ATCCCGACCT GGTTCCTGCT GCTCGCCTGG ATCGTCGGGG CCGCCTTCAC CGTCACCGGC
GCGCTGACCA ATGATCTCGT CTCGCCGGCG CTGATTGGCG GCCTTGTGCT GATCGTCATG
CTGATCGGCT TTACGATCAT GCAGAACGCC TTTGTCGGCG CCGGGCTCGC CCATGGCGCA
GTGCCGGACG CCGAGCGTAA GGCGCTGGCC TTCACCGGCA GCGGCGACAT CATCTTCGAC
TGGGACGTCA GCGCCGACCG CGTCTATGTG AGCCCCGAGG TCGAGGCCCA GCTCGGCCTT
CAGCGCGGCG CCCTCGAAGG GCCCGCCTCG AACTGGTTCG ACGTGCTGCA TCAAAGCGAG
CGCGACCGCT ACCGCGCCTG TCTCGACGCC ATGCTGGAAC AGCGCCGCGG CCGCATCAAC
CAGGATTTCA GGCTGCGCGC GGCCGACGGC CAGCATTTCT GGTTCCGCCT GAAAGCGCGG
CCGGTGATCG GCGCCGACGG CGAAGTGGTG CGGATTGTCG GCGTCCTCAG CGACATCACG
GAAATCAAGA CCGCCGAGGA GCGGCTGCTC CACGACGCGG TACATGACAA CCTGACCGGG
CTCCCGAACC GGGAGCTGTT CTTCGATCGT CTCGACGCGG CGCTCTCCCT CGCGCAGAGC
GATCCGAAAA TCCGGCCGGC GGTGATGAGC ATCGACATCG ACCGCTTCAA GCAGATCAAT
GAGCAGGTCG GCCTCTCGGC CGGCGATTCG ATCCTGTTGA CGGTGGCGCG CCGGCTCGGG
CGCATCCTGA AGCCGCAGGA CACGCTCGCC CGCCTGTCCG GCGACCAATT CATTTTGCTG
ATCGTCTCGG AATCCGAAGC CGATCAGATC ACGGCTCTCG CCAATACGGC GCGCCGCGTG
GCTTCGACGC CGGTCTCCTT CAGCGACAAG GAAATTCCCC TCACCGCCTC GATCGGCCTC
GCCTTCTACG ATCCGCAGCT CCACGGCAAG CGCGAGGACA TGCTGAAAGA CGCCGAAATT
GCGATGCGCC ACGGCAAGCG TCTCGGCGGC AACCGGATCG AGGTGTTCCG CGCCACCATG
CGCTCGCTTC GCTCGGACCG TTTCGGGCTT GCCGCCGATC TCAAGCGAGC GCTCGACCGC
GGCGAGATGA AAGTGGTGTT TCAGCCGATC GTCCGTCTTG AGGACCGCAC CGTGGCCGGT
TTCGAGGCGC TGCTGCGCTG GGACCATCCC CGTCTCGGTC GCCTCAATCC CGGCGAGTTC
ATCTCCGTCG CCGAGGAGAC GGGAGTCATT ATCGACCTTG GGATTTTCGC CATGGACCGC
GCCGCGCGCG AGCTCGCCGT ATGGCAGCGC GCGCTCGACG TCGATCCGCC GATCTTCGTC
AGCGTCAATG TCTCGTCGCG GCAATTGCTG CGGCACGATT TGCTTCAGGA CGTCAAATCG
GTGCTTTCGC GCGTCGAGAT CGCGCCTGGC TCGCTGAAGC TGGAGCTGAC GGAAAGCCTC
GTCATGGAGA ATCCGGAATA TGCGGCGCAA ATCCTGACCC GCATCCGCGA TCTCGGCGCC
GGGCTCTCGC TCGACGATTT CGGAACCGGC TATTCCTCGC TCGCCTATCT GCAGCGTTTT
CCATTCGACA CCATCAAGAT CGACCGCTCT TTCGTGCGCC AGAATGGCAA TGGCGCACGC
CCCGTCATTT TACGTTCGAT CGTCGCGCTG GCGCATGATC TCGGCATGGA GGTCGTCGCC
GAGGGGGCGG AGGCCGAATC CGACGCCATC GAGCTCTATC AGCTCGGCTG CGAATTCGCG
CAGGGCTTCG CCTTTGGCCA CCCGATCAGC GCGGCCGAAG CCCGAAAGCT TGTCGGCGCC
GCCACAATAG CAGCCTGA
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| Protein sequence | MAQGFAALGR CLFLLCALAL TLAGALGPAN AIESVRVPLD SQVIDLTKAV ESYNSDGDRL
LVSTAPGSDG IVRRIEVRAR EEGTRPNWIV FALTNDTSEQ IERLIVAPHF RLVGSGVIWP
DLGATRISAI TASQGFPPER EDSEDADVFR LTLDPGTTIT YVAELRTPNL PQLHLWEPDA
YKDRMTSLAL YKGIIIGVAG LLALFLTIVF VVRGAVIFPA AAALAWTVLA YVCIDFGFWG
RIIGSEGQSD RIWRAGTESI LAATLLVFLF AYLNLNRWHV RASHVAAIWL IFLAALVGLS
VYDAPVAAGV ARISIATIGA VGFVLVLYLA IHGYDRAVML IPTWFLLLAW IVGAAFTVTG
ALTNDLVSPA LIGGLVLIVM LIGFTIMQNA FVGAGLAHGA VPDAERKALA FTGSGDIIFD
WDVSADRVYV SPEVEAQLGL QRGALEGPAS NWFDVLHQSE RDRYRACLDA MLEQRRGRIN
QDFRLRAADG QHFWFRLKAR PVIGADGEVV RIVGVLSDIT EIKTAEERLL HDAVHDNLTG
LPNRELFFDR LDAALSLAQS DPKIRPAVMS IDIDRFKQIN EQVGLSAGDS ILLTVARRLG
RILKPQDTLA RLSGDQFILL IVSESEADQI TALANTARRV ASTPVSFSDK EIPLTASIGL
AFYDPQLHGK REDMLKDAEI AMRHGKRLGG NRIEVFRATM RSLRSDRFGL AADLKRALDR
GEMKVVFQPI VRLEDRTVAG FEALLRWDHP RLGRLNPGEF ISVAEETGVI IDLGIFAMDR
AARELAVWQR ALDVDPPIFV SVNVSSRQLL RHDLLQDVKS VLSRVEIAPG SLKLELTESL
VMENPEYAAQ ILTRIRDLGA GLSLDDFGTG YSSLAYLQRF PFDTIKIDRS FVRQNGNGAR
PVILRSIVAL AHDLGMEVVA EGAEAESDAI ELYQLGCEFA QGFAFGHPIS AAEARKLVGA
ATIAA
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