| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_1012 |
|---|
| Symbol | |
|---|
| ID | 7091840 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylocella silvestris BL2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011666 |
|---|
| Strand | + |
|---|
| Start bp | 1099116 |
|---|
| End bp | 1099991 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643464351 |
|---|
| Product | 3-hydroxybutyryl-CoA dehydrogenase |
|---|
| Protein accession | YP_002361343 |
|---|
| Protein GI | 217977196 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.00272421 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATTA ACAAAATCGG GGTGATCGGC GCTGGTCAGA TGGGCACGGG GATCGCACAG
GTCTGCGCCT TGGCCGGCAT TGATGTCGCC CTCAACGACA TTTCGGAAGA GCGCATCAAG
ACCGGCCTGT CCGTCGTCGG CGCGAGCCTC GCCAAGCAGG TCGAGCGCCA GCAATTCGAT
TCCGCGACGC GCGACGCCGC GCTCGCCCGC ATCAAGCCGG CGGCCGACTA TGGCGCATTC
GGCGATTGCG ATCTGATCAT CGAGGCCGCT TCCGAGAACG AAGAGGTCAA GCGCAAGATC
TTCAGCCAGG TTTGCGCCTC GGCTCGCGCC GACGCGCTGC TGGCCAGCAA TACGTCGTCG
ATCTCGATCA CGCGGCTCGC CTCGGTCACC GACCGTCCGG AGCGGTTCAT CGGCATTCAT
TTCATGAATC CGGTGGCGCG CATGCAGCTG GTCGAGCTGA TCCGCGGCAT CGCCACGGAG
AACGAAACCT TCGAGGCCGC GAAGGATCTC ATTATTCGTC TCGGCAAGAC CTATACGGTG
TCGGAGGATT TTCCGGCCTT CATCGTCAAC CGCATTCTGC TGCCGATGAT CAATGAGGCG
ATCTATACGC TCTATGAGGG CGTCGGCTCG GTCGAGGCGA TCGACACGGC GATGCGCCTC
GGCGCCAATC ATCCGATGGG GCCGCTACAG CTCGCCGACT TCATCGGGCT CGATACGGTG
CTCTCGGTGA TGCAGGTGCT GCATGAGGGG CTCGCCGATT CGAAATATCG GCCCTGCCCG
TTGCTGGTCA AATATGTCGA GGCCGGCTGG CTGGGGCGCA AGACGCAACG CGGCTTCTAT
GATTACCGCA GCGGAACGCC GATCCCGACC CGTTAA
|
|---|
| Protein sequence | MAINKIGVIG AGQMGTGIAQ VCALAGIDVA LNDISEERIK TGLSVVGASL AKQVERQQFD
SATRDAALAR IKPAADYGAF GDCDLIIEAA SENEEVKRKI FSQVCASARA DALLASNTSS
ISITRLASVT DRPERFIGIH FMNPVARMQL VELIRGIATE NETFEAAKDL IIRLGKTYTV
SEDFPAFIVN RILLPMINEA IYTLYEGVGS VEAIDTAMRL GANHPMGPLQ LADFIGLDTV
LSVMQVLHEG LADSKYRPCP LLVKYVEAGW LGRKTQRGFY DYRSGTPIPT R
|
|---|
| |