| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_0683 |
|---|
| Symbol | |
|---|
| ID | 7093764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylocella silvestris BL2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011666 |
|---|
| Strand | + |
|---|
| Start bp | 742549 |
|---|
| End bp | 744129 |
|---|
| Gene Length | 1581 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643464017 |
|---|
| Product | 2-isopropylmalate synthase |
|---|
| Protein accession | YP_002361016 |
|---|
| Protein GI | 217976869 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 0.725586 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGACC CCGCCTCCCC GTCGCGCTTC GAGTCCGCGC GAAATTCCGA ATCCGTCGTC
ATCTTCGACA CCACCTTGCG CGACGGCGAG CAATCGCCCG GCGCGACCAT GTATCTTGAA
GACAAGCTGC AGGTCGCCGA AGTGCTCGAC CATATGGGCG TCGACATCAT CGAAGCCGGA
TTCCCAATCG CCTCCGAAGG CGATTTTGAG GCTGTCTCAG CCATTGCGGA ACGCACCAAA
AACGCCGTGA TCGCCGGGCT CGCCCGCGCT ATCGAAGGCG ACATCGCCCG CTGCGGCGAA
GCGGTCCGCA AAGCGCGCCG GCCGCGTATT CATACTTTCG TCTCGACCTC GCCGATTCAT
CTTCAGCATC AGATGAACAA GAGCGAGGCC CAGGTGCTCG AGATCATCGC CCGGACGGTG
ACGCAAGCGC GCAATCTCGT GGACGACGTC GAATGGTCGG CGATGGACGC GACGCGCACC
CCGATCGACT ATCTCTGCCG CTGCGTCGAG GCGGCCATCC GCGCCGGCGC CACGACGATC
AATCTGCCGG ACACCGTCGG CTACGCCTTG CCCGAAGAAT ATGAGGCGAT GTTCCGCCAA
ATCCGTGAGC GCGTGCCGGA CGCCGACAAG GCTGTGTTTT CGGTGCATTG CCACGACGAT
CTCGGGCTCG CCGTCGCCAA TTCGCTGGCG GGCGTGCGCG GCGGCGCGCG CCAGGTCGAA
TGCACCATCA ACGGTCTTGG CGAACGCGCA GGCAACGCCG CGCTCGAAGA AGTCGTCATG
GCGCTGAAGA CGCGCGGCGA TTCGCTGCCC TATCACACGG AAATCGATTC AACCCTGCTG
ACTCGGGCCT CGAAGCTGGT GTCGGCGGTG AGTTCGTCGC CGGTGCAGTT CAACAAGGCG
ATCGTCGGCC GCAACGCCTT CGCCCATGAG AGCGGCATCC ATCAGGACGG GATGCTCAAG
AACGCCCAGA CCTATGAGAT CATGACCCCG GCCAGCGTCG GCGTCAGCAA GACCTCCCTG
GTGATGGGCA AGCACTCCGG CCGCCACGCC TTCAAGGACA AGCTGCGCGA GCTTGGCTAT
GAGCTCGCCG ACAACGCCCT GCACGACGCC TTCGTGCGCT TCAAGGATCT CGCCGACCGC
AAGAAGGTCG TCTACGACGA GGATTTGATG GCGCTCGTCG ACGATGAAAT CGTGCATGCG
CATGACCGCA TCAAGCTCGT CGACCTCACC GTTTTCGCCG GGACCAAGGG ACCGCAGTCG
GCGGCGCTGA CCCTCGACAT CGACGGAACG CATGTGACGC ATCAGGCGAC CGGCAACGGC
CCGGTCGATG CGATCTTTAA CGCCATCCAG GCGCTGGTGC CGCATGGGGC CGTGCTCGAA
CTGTTTCAGG TTCACGCGGT CACCAAGGGA ACCGACGCGC AGGCGGAGGT TTCGGTGCGG
CTCGCCGAGG ACGGCAAGAC GGTGACGGCC AAGGGCGCCG ACCCCGACAC GCTGGTCGCC
GCGGCGAAGG CCTATATCGC CTCTCTGAAC AAGCTGATGA TGAAGCGCGG CAAGTCGCAG
CGGGACGCGC TCGCCGGATG A
|
|---|
| Protein sequence | MTDPASPSRF ESARNSESVV IFDTTLRDGE QSPGATMYLE DKLQVAEVLD HMGVDIIEAG
FPIASEGDFE AVSAIAERTK NAVIAGLARA IEGDIARCGE AVRKARRPRI HTFVSTSPIH
LQHQMNKSEA QVLEIIARTV TQARNLVDDV EWSAMDATRT PIDYLCRCVE AAIRAGATTI
NLPDTVGYAL PEEYEAMFRQ IRERVPDADK AVFSVHCHDD LGLAVANSLA GVRGGARQVE
CTINGLGERA GNAALEEVVM ALKTRGDSLP YHTEIDSTLL TRASKLVSAV SSSPVQFNKA
IVGRNAFAHE SGIHQDGMLK NAQTYEIMTP ASVGVSKTSL VMGKHSGRHA FKDKLRELGY
ELADNALHDA FVRFKDLADR KKVVYDEDLM ALVDDEIVHA HDRIKLVDLT VFAGTKGPQS
AALTLDIDGT HVTHQATGNG PVDAIFNAIQ ALVPHGAVLE LFQVHAVTKG TDAQAEVSVR
LAEDGKTVTA KGADPDTLVA AAKAYIASLN KLMMKRGKSQ RDALAG
|
|---|
| |