| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_4515 |
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| Symbol | |
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| ID | 7090260 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011665 |
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| Strand | + |
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| Start bp | 37095 |
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| End bp | 39221 |
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| Gene Length | 2127 bp |
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| Protein Length | 708 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 643463319 |
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| Product | type IV conjugative transfer system coupling protein TraD |
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| Protein accession | YP_002360331 |
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| Protein GI | 217975732 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | [TIGR02759] type IV conjugative transfer system coupling protein TraD |
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Plasmid Coverage information |
| Num covering plasmid clones | 55 |
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| Plasmid unclonability p-value | 0.115139 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 83 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCTTAA ACCCCAAACG TACTAAAGGC AGTAACTACA CCCGTGGTGG CCAGATTTTA
TTTCACAATT TGCGGATGTT TTTGCAGATT AACGCCGTGC TTATACGCTG GACGTGTTAT
GGCGTGCTCA TCTTAACAGC GCTGCTATGC TATCTCTTCC TTGATAAAGA CACCTTAACG
GGCGCTTATT ATTATTGGAT AAACCAAACG GTTAGCGTGT TTAGACCAGA AAGTCATGTT
ATGCAGACTG AATGGCAAGG CACTGTCTAT ACCAGTACGT TAGGATCTCA ATTAGAAAAC
CCGATACTGA TTGCGGCCAA CAGCCGCTTT TGGTTATGGA CACAAATTTA TCTCCTTATA
AGCTGTGTGA TTGGCATCGT TTTCCTGTCA GTGGCCATGT GGTATTTCAA GAAAAAAGGG
GATGAGCAAA CCGAGGAACA CTTTATTCGG GGGATGCAAA AAGCCACGCC GAAGGAATTA
GCAAAACAGC TTAAAAAGGA CAGGCGTCAG TCCGATTTCA AGCTCGATGG CATCGGTATT
TTCAAAGAAC GCTTTGAAGT ACAGCACTTG TTACTTGATG GCACGACAGG CGCGGGGAAG
TCCGTGGCAC TGCGTAAGTT TTTAACGTGG ATACGTGAAC GCGGCGACAA GGCCATTATC
TATGACAAAG GCTGTACCTT TGTCAGCAAG TTCTATAATC CAGCAACGGA CGTACTGCTG
AACCCGTTTG ATGAACGCTG TGCCTATTGG GATGTGTGGT GTGATGCGCA TGAACCCTCA
GATTTTGAGA ACATGGCGAG CGCGCTCATT CCCCAGCATG GTGAGGGCGA TCCATTTTGG
GTGCAGTCTG CACGTACCAT TTTTTCATCT ACTGCATTTA AGATGCAAGA TGAACCTAAA
AAGAACCAAA CCACTGAACG ACTGCTTGAA CTCATGCTGA CCAGCGAGCT TGAGTCCTTA
AGTGAGTATC TTAAAGGGAC CGAATCGGCC TCACTGGTAT CCGATAAAAT CCAAAAAACG
GCGATATCCA TTAAGTCGGT TCTCGCGGCT TACATCAAAT CATTACGATT CCTTGCCGGA
CTGGATGAAA AGGACGAACA GGGAAAACTC CTTCGCCGCA AATTTTCAAT TCGTGAGTGG
GTGAAAAACG ATGCCGAAAA TGGCTTTCTA TTTCTATCCA GTAACGCACA GCAACATGCC
TCACTGCGCC CCTTAATTTC AATGTGGCTA TCCATTGCCT CGACCGCCAT TTTAGAACAA
GACGAAAACC CCGACCGCAG AATTTGGGTG TTGATGGATG AAGCACCAAG CTTGCACAAG
TTACCTGAAC TTGCCGAAAC AATCGCCGAA GTGCGCAAGT TCGGCGGCTG TTATGTCATA
GGCATTCAGT CATTTGCTCA GCTTAAAAAA GTCTATGGCG AAAATGCGGC GCTTGAAATG
TTCGACTTGC TTAACACTCG CTTATTTTTC CGCTCACCCT CTAACGAAAT GGCCAAAATC
TCGTCTCACG ATTTAGGCGA GCAAGAAGTC GATGTCTCTA AAGAGCAATA CAGCTACGGC
GCTAATGAAA TCAGGGATGG CGTATCACTG GGCCATCAAA CCATTACCCG CCCTGTTGTC
ACGCCCTCTG AAATCATGCA GCTTGAAGAT TTACAATTCT GGCTACGCAC GCCTGGCAAT
TATCCCGTGG TAAGAGTGGA TTTAGTCTTT AACCAAATGC GCTCACTGTG CGCCCCGTTT
ATCAAACGCA ACTACACCCC GTCTGAAAAC ATAAAGCAGA TTGAATGGAG TCTGAACTAT
CACCAGTTCA GTGCGGTTCA ACACGTCGAT AAGGCAGATA AAACCAAGCT CCAAAGCATT
CATGACACCA TGTATGAAGG GGATGAAAAC AATGATGAAC GCAGCGCGGA AGCGCAGCGC
ATGACCAAAC TTGCTGAAAA AACCGATGCG GTCGCCCAAA GCCTCATCGA TGCGAAAAAG
GCCAAACCGA CTGAGTTAGC GCTCAAGGAT GCGCAGAAGA AAAAAGCCGC TGAAAAACAA
AAGGCCAATG ACCAGCACAT TGAGGATGCA CAGCGACTTG AAGAGCAACA AATAGCCTCA
GTACACGAAG AAATATCGCT CGACTAA
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| Protein sequence | MTLNPKRTKG SNYTRGGQIL FHNLRMFLQI NAVLIRWTCY GVLILTALLC YLFLDKDTLT
GAYYYWINQT VSVFRPESHV MQTEWQGTVY TSTLGSQLEN PILIAANSRF WLWTQIYLLI
SCVIGIVFLS VAMWYFKKKG DEQTEEHFIR GMQKATPKEL AKQLKKDRRQ SDFKLDGIGI
FKERFEVQHL LLDGTTGAGK SVALRKFLTW IRERGDKAII YDKGCTFVSK FYNPATDVLL
NPFDERCAYW DVWCDAHEPS DFENMASALI PQHGEGDPFW VQSARTIFSS TAFKMQDEPK
KNQTTERLLE LMLTSELESL SEYLKGTESA SLVSDKIQKT AISIKSVLAA YIKSLRFLAG
LDEKDEQGKL LRRKFSIREW VKNDAENGFL FLSSNAQQHA SLRPLISMWL SIASTAILEQ
DENPDRRIWV LMDEAPSLHK LPELAETIAE VRKFGGCYVI GIQSFAQLKK VYGENAALEM
FDLLNTRLFF RSPSNEMAKI SSHDLGEQEV DVSKEQYSYG ANEIRDGVSL GHQTITRPVV
TPSEIMQLED LQFWLRTPGN YPVVRVDLVF NQMRSLCAPF IKRNYTPSEN IKQIEWSLNY
HQFSAVQHVD KADKTKLQSI HDTMYEGDEN NDERSAEAQR MTKLAEKTDA VAQSLIDAKK
AKPTELALKD AQKKKAAEKQ KANDQHIEDA QRLEEQQIAS VHEEISLD
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