| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_4390 |
|---|
| Symbol | |
|---|
| ID | 7090177 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011664 |
|---|
| Strand | + |
|---|
| Start bp | 57280 |
|---|
| End bp | 59406 |
|---|
| Gene Length | 2127 bp |
|---|
| Protein Length | 708 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 643463261 |
|---|
| Product | type IV conjugative transfer system coupling protein TraD |
|---|
| Protein accession | YP_002360273 |
|---|
| Protein GI | 217975603 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | [TIGR02759] type IV conjugative transfer system coupling protein TraD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 0.734886 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCTTAA ACCCCAAACG TACTAAAGGC AGTAACTACA CCCGTGGTGG CCAGATTTTA
TTTCACAATT TGCGGATGTT TCTGCAGATT AACGCCGTGC TTATCCGCTG GACGTGTTAT
GGCGTGCTCA TCTTAACAGC GCTGCTATGC TTCCTATTCA TTGATAAAGA TACCTTAACA
GGCGCTTATT ATTACTGGAT AAACCAAACG GTTAGCATGT TTAGACCAGA AAGCCATGTC
ATGCAGACTG AATGGCAAGG CACTGTCTAT ACCAGTACGT TAGGGTCTCA ATTGCAAAAC
CCAATACTGA TTGCGGCCAA CAGCCGCTTT TGGTTGTGGT CACAAATCTA CTTCCTTATA
AGCTGTGTGA TTGGCTTCGT ATTTCTCTCC GTGGCCATGT GGTTTTTCAA GAAAAAAGGG
GACGAGCAAA CCGAGGAACA CTTTATTCGG GGGATGCAAA AAGCCACGCC GAAGGAATTA
GCAAAACAGC TTAAAAAGGA CAAGCGCCAG TCCGATTTCA AGCTCGATGG CATCGGTATT
TTCAAAGAAC GCTTTGAAGT ACAGCACTTG TTACTTGATG GCACCACGGG CGCGGGAAAG
TCCGTGGCGC TGCGTAAGTT TTTAACGTGG ATACGTGAAC GGGGCGACAA AGCCATTATC
TATGACAAAG GCTGTACCTT TGTCAGCAAG TTCTATAATC CGGCAACGGA CGTACTACTA
AACCCGTTTG ATGAACGCTG TGCTTACTGG GATGTGTGGT GTGATGCGCA TGAGCCCTCA
GATTTTGAGA ACATGGCGAG CGCGCTCATT CCCCAGCATG GTGAGGGCGA TCCATTCTGG
GTGCAATCTG CTCGCACCAT TTTTTCATCT ACTGCATTTA AGATGCAAGA TGAACCTAAA
ATGAACCAAA CCACTGAACG ACTGCTTGAA CTCATGCTGA CCAGCGAACT TGAGTCCTTA
AGTGAATACT TAAAAGGGAC CGAATCGGCC TCACTGGTAT CAGATAAAAT CCAAAAAACG
GCGATATCCA TTAAGTCGGT CCTCGCGGCC TACATCAAAT CATTACGATT CCTTGCCGGA
CTGGATGAAA AGGACGGACA GGGAAAACTC CTTCGCCGCA AATTTTCAAT TCGTGAGTGG
GTGAAAAACG ATGCCGAAAA TGGCTTTCTA TTTCTATCCA GCAACGCACA GCAACATGCA
TCATTGCGCC CCTTGATCTC AATGTGGCTA TCCATTGCCT CGACCGCCAT TTTGGAACAA
GACGAAGATC CGGACCGCAG AATTTGGGTG TTGATGGATG AAGCACCAAG CTTGCACAAG
TTACCTGAAC TTGCCGAAAC AATCGCAGAA GTGCGTAAGT TTGGCGGCTG TTATGTCATA
GGCATTCAGT CATTCGCACA GCTTAAAAAA GTCTATGGCG AAAATGCGGC ACTTGAAATG
TTCGACTTGC TCAACACTCG CTTATTTTTC CGCTCACCCT CTAACGAAAT GGCCAAAATC
TCGTCTCACG ATTTAGGCGA GCAAGAAGTC GATGTATCTA AAGAGCAATA CAGCTACGGC
GCTAATGAAA TCAGGGATGG CGTATCACTG GGCCATCAAA CCATTACCCG CCCTGTGGTC
ACGCCCTCTG AAATCATGCA GCTTGAAGAT TTACAATTTT GGCTGCGCAC GCCTGGCAAT
TATCCCGTGG TAAGAGTGGA TTTAGAGTTT AACCAAATGC GCTCACTGTG CGCCCCGTTT
ATCAAACGTA ACTACACCCC GTCTGAAAAC ATAAAGCAGA TTGAATGGAG TCTGAACTAT
CACCAGTTCA GTGCGGTTCA ACACGTCGAT AAAGCGGATA AAACCAAGCT CCAAAGCATT
CATGACACCA TGTATGAAGG GGATGAAAAC AATGATGAAC GCAGCGCGGA AGCGCAGCGC
ATGACCAAAC TTGCTGAAAA AACCGATGCG GTCGCCCAAA GCCTCATCGA TGCGAAAAAG
GCCAAACCGA CTGAGTTAGC GCTCAAGGAT GCGCAGAAGA AAAAAGCCGC TGAAAAACAA
AAGACCAATG ACCAGCACAT TGAGGATGCA CAGCGACTTG AAGAGCAACA AATAGCCTCA
GTACACGAAG AAATATCGCT CGACTAA
|
|---|
| Protein sequence | MTLNPKRTKG SNYTRGGQIL FHNLRMFLQI NAVLIRWTCY GVLILTALLC FLFIDKDTLT
GAYYYWINQT VSMFRPESHV MQTEWQGTVY TSTLGSQLQN PILIAANSRF WLWSQIYFLI
SCVIGFVFLS VAMWFFKKKG DEQTEEHFIR GMQKATPKEL AKQLKKDKRQ SDFKLDGIGI
FKERFEVQHL LLDGTTGAGK SVALRKFLTW IRERGDKAII YDKGCTFVSK FYNPATDVLL
NPFDERCAYW DVWCDAHEPS DFENMASALI PQHGEGDPFW VQSARTIFSS TAFKMQDEPK
MNQTTERLLE LMLTSELESL SEYLKGTESA SLVSDKIQKT AISIKSVLAA YIKSLRFLAG
LDEKDGQGKL LRRKFSIREW VKNDAENGFL FLSSNAQQHA SLRPLISMWL SIASTAILEQ
DEDPDRRIWV LMDEAPSLHK LPELAETIAE VRKFGGCYVI GIQSFAQLKK VYGENAALEM
FDLLNTRLFF RSPSNEMAKI SSHDLGEQEV DVSKEQYSYG ANEIRDGVSL GHQTITRPVV
TPSEIMQLED LQFWLRTPGN YPVVRVDLEF NQMRSLCAPF IKRNYTPSEN IKQIEWSLNY
HQFSAVQHVD KADKTKLQSI HDTMYEGDEN NDERSAEAQR MTKLAEKTDA VAQSLIDAKK
AKPTELALKD AQKKKAAEKQ KTNDQHIEDA QRLEEQQIAS VHEEISLD
|
|---|
| |