| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_4324 |
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| Symbol | trmE |
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| ID | 7089129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | - |
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| Start bp | 5141684 |
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| End bp | 5143045 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 643463201 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_002360213 |
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| Protein GI | 217975462 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0616134 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000000000430527 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | GTGACAACTG ACACTATCGT GGCTCAAGCC ACCGCGCCCG GACGTGGCGG CGTTGGCATC
ATTCGAATTT CAGGCGACAA GGCCAGTGAT GTCGCTATGG CCGTATTAGG TCATCTTCCT
AAAACCCGAT ATGCCGATTA TTGCGATTTT AAGAGTGCAT CGGGCCAAGT AATAGACCAA
GGCATAGCGC TGTTTTTTAA AGGACCGAAT TCCTTTACTG GCGAAGATGT CTTAGAACTT
CAAGGCCACG GCGGCCAAAT TGTCCTCGAC ATGCTGATCA AACGTGTAAT GGAAGTCGGT
GGTATTCGTA TCGCAAAACC AGGCGAGTTC AGCGAACAAG CCTTTATGAA CGATAAACTC
GACTTAACCC AAGCCGAAGC CATTGCCGAC CTTATCGACG CCACCAGTGA ACAAGCCGCT
AAAAGCGCGC TGCAATCACT ACAAGGTGAA TTTTCTAAGG AAGTCCACGA GCTGGTGGAC
CAAGTCACTA ACCTGCGTTT ATACGTTGAA GCCGCAATTG ATTTCCCCGA TGAAGAAGTC
GACTTTTTAA GTGACGGCAA AATTGCCAAT GCACTCTATA AAATCATCGA CAAACTTGAC
CTAGTGCAAG CCAGTGCCAA GCAAGGTTCT ATCATTCGTG AAGGGATGAA AGTGGTAATT
GCCGGTCGTC CCAATGCCGG AAAATCAAGC TTACTGAATG CGTTAGCGGG TAAAGAGTCG
GCCATTGTGA CTGAAATTGC CGGTACAACA CGCGACGTAT TACGTGAACA TATCCATTTA
GATGGTATGC CGCTGCACAT TATTGATACC GCAGGCCTGC GTGATACCAC AGATACGGTA
GAACAAATTG GCATTGAACG CGCATGGAAT GAGATAAATA GCGCCGATCG CGTGCTATTT
ATGGTGGACG GCACAACAAC CGCCGCCGTC GATCCCCATG CTATTTGGCC TGACTTTGTC
GATCGCCTGC CCTCCAATTT AGGCGTGACA GTGATCCGTA ATAAAGCCGA TCTCACGGGC
GAAGACTTAA TGATGACCGA AGAACAAGGT TATAGCGTCT ACCGGATCTC GGCTAAAACA
GGCTTAGGTG TTGAAGAATT AAAGCAACAC TTGAAGTCAC TTATGGGTTA TCAAAGTAAT
CTCGAAGGTG GCTTTATCGC CCGTCGTCGT CACTTAGAAG CCCTTGAATT AGCCGCAGGA
CACCTGCAAT TGGGTAAAGA GCAGTTAGAG GTTTACCTTG CCGGAGAGCT GCTGGCGGAA
GAGCTGCGTA TGTGCCAATT AGCACTATCT GAGATCACTG GCCGCTTCAC TTCTGACGAT
TTACTCGGCA AGATTTTCAG CTCTTTCTGT ATCGGGAAGT AA
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| Protein sequence | MTTDTIVAQA TAPGRGGVGI IRISGDKASD VAMAVLGHLP KTRYADYCDF KSASGQVIDQ
GIALFFKGPN SFTGEDVLEL QGHGGQIVLD MLIKRVMEVG GIRIAKPGEF SEQAFMNDKL
DLTQAEAIAD LIDATSEQAA KSALQSLQGE FSKEVHELVD QVTNLRLYVE AAIDFPDEEV
DFLSDGKIAN ALYKIIDKLD LVQASAKQGS IIREGMKVVI AGRPNAGKSS LLNALAGKES
AIVTEIAGTT RDVLREHIHL DGMPLHIIDT AGLRDTTDTV EQIGIERAWN EINSADRVLF
MVDGTTTAAV DPHAIWPDFV DRLPSNLGVT VIRNKADLTG EDLMMTEEQG YSVYRISAKT
GLGVEELKQH LKSLMGYQSN LEGGFIARRR HLEALELAAG HLQLGKEQLE VYLAGELLAE
ELRMCQLALS EITGRFTSDD LLGKIFSSFC IGK
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