| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_4144 |
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| Symbol | |
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| ID | 7088467 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | - |
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| Start bp | 4920118 |
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| End bp | 4923765 |
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| Gene Length | 3648 bp |
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| Protein Length | 1215 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 643463023 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) |
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| Protein accession | YP_002360038 |
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| Protein GI | 217975287 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGCCAGC TAGAAGGACT ACACATAAAG TCATTTATTC CATACCTTAA GGTAAATATT
TTCATCGCCT TAGCTTACAT TGTTGTAGGT AAATTAGGCT TGATGATTGC TTTGCCGCCT
GGATATTCTG CGGCGATTTG GCCTGCCGCA GGGATTGCTA TTGCCGCATG TATCCTGTGG
AAAGAATATG TCCCTTGGGT TGGCGTGTTC ATCGGTTCGC TGCTGATTAA CATCAATATT
GGTGGGCATA TCCATTTTGG TTGGTTACCC TTTGCTATCT CGATTGGGTC TTGTATGCAG
GCTGTGCTTT CAGCCCATGT TCTTGGCCGA GTCGATCATT TATTCACCTT AGATAATCCT
AATACCGTCA TTAAATCCTG CTTGAGCTTA GCCTTAACTT GTATTGTGGC GACCGTTTTT
GGCAACAGTG CCTTAGTGGT CAACGGTACG ATTCCACCAT CTGATTTACT GGGTAGTTTA
GTGAATTGGT GGACGGGGGA CTTGCTCGGC GCCGTGATCT TTATCCCTTT GACTATGTTG
CTATTTGATA AGCGGACTAT CTGGCGCGCT CGCCGCATTC AGACGGGTGT TCCCCTGCTG
GTGGGCTTTT TATTCTGTGT GGGAATTTAT TACTACTCGG ATATGAACCA GCGCCAACAG
TTGCAGGATA AGTTTCAGAT CCAATCCAAT GCCGTGATTA GCAATATTGA AAGTTTTCAA
GAGGCTAACC TGCAGCAAAT CGTCGCCCTA GCGAGCTTGT TCGATAATAG CGAGCAGGTT
TCAGAGGATG AGTTTGTGCA ATTTGGCAAA CGTAACATGC TGCAGCAAGA TGGCTTTAGA
GCTTGGTCTT GGTCGCCGTT AGTGGCGGCC GCCGATCTGC CCAGTTTTGA GGCATCGACC
CGCTCAGCCA TTGGCGGCCC TTACAAAGTC ACGCGGCCTC AAGGCTGGCA AACTAATACC
GATGGCTGGT TAGTGCCTGT GATGTACATT CAGCCAATCA TAGGCAATGA GGCGGCGCTG
GGATTAGATC TCAATAGCGA GCCGACACGA GCCGCTGCCA TTGCCAAAGT GCGCGCGACC
TTAGCGCCTG TGATGACGGC TAAGATTCAA TTAGCTCAAG ATCCCAATGG CCCGGGTGGT
ACTTTACTCA TTGCGCCCGC GTTCGACCGA CTAGGCAGAA TCTCAGGATT TTGTTCAGCT
GTGATTGATT TGCAAAGCAT TATTAATGAT GTTGAGAGCG TGAAGGGATT GCAGTGGAAA
CTCTCCGACA TGAGTGCGGG CGGTGCATTA CTTTATAGTA ATACCAAGAA GTCGTTTCCC
GCGTTTAGCA GCAAGCTATT TAGCGATAAA ACCGGCCAGT ATTTTCAAGC AAACCTGATG
CTAGCGGATC GGCATTGGCA CATAGTGATT TATCAATCCT ATGCTGTGCT GATGGGCGAT
ACTTTTAGCT TATCGCTACT TATGCTGCTC CTCGCCTTTA TCACTTGTGC TGTTGTGGGC
GGTATGACAC TGGTTTCCTC CGGAGAGCGC CAACGTATTG CCGAGAAAGT GACTGAAAAA
ACCATGGCCT TGTCGAAGGA GATTGCCCGC CGTCAGGCTT TTCAGGCTAC CTTGGTACAA
AGCGAGCAAA GATATCGTAA TTTGTTTGAT AAGGCGCCTG TAGGGCATGT GCTTAAACGT
TTAGATGATG GTCAGTTTGT GGCGATTAAC CCCGCATTCG AAGCCATGAC GGGTTACTCA
CTCGATGAGT TAAATCAGCT CGACCCTTGG GATCTCACGC CAAAGCGTTA TCAATTAAGT
GAAACTGAGC AATTAGAGCG CCTAAAGCAA ACGCGTCGTT ATGGCCCCTA TCAGAAGCAT
TATGTTCATA AGAATGGCCA GTTAGTGGCG GTGCGCCTCA ATGGTGCGTT AGTCACAGGC
GCCGATGGTG AGCAGCTTAT TCTCTTTATC GTTGAAGATA TTACCGAGCA GGAGCGCACC
GTTGCGCGGG TAAATCTATT GGCGCAGGTG TTCCAGCAGA GTGGTGAAGG CATCACTATA
ATGGATGCCA ACGACATTAT TGTGGATGTG AATAGTGCGT TTTCTCAGAT AACCGGTTAT
TCCCGAGAAG AAATCATTGG TAAAAACTGC CGCTTTTTAG AGGCCGAGCG TACCGACAAA
GGTATCGATC CTCAAGTGCG TGCTGCCCTA GAACAAACAG GTTTCTGGCA AGGTGAAGTT
TGGGACAGGC ATAAGCATGG TTACGATTTC CCTAAATGGT TGATGATGTC TGTGGTGCGC
GATGACGCAG GTGCGGTGAG CCATTACATC GGCAGCTTTA CCGATATCAG CGAGCGTAAA
GTCAGTGAGG AACGGATCCA TTTCCTCGCC CACCATGATT CTTTGACGCT ACTGCCTAAT
CGACTCAGCT TGCAGTCGCG CCTCGAAGTG GTATTCAGGG AGGCGCTGGC ATCCGACAGC
CAAATTGCGG TGATGTTTAT CGACATGGAC CACTTTAAAA ATATCAACGA CACCTTGGGT
CATCATGTGG GCGACCAACT GTTGTTAGAA GTGGCGCGTC GTTTGAAAAA CATTGTTGGT
GATACTGACA CTGTGGCGCG TCTGGGTGGC GATGAGTTTG TGGTCGCATT ATCTGATACG
AACCATGATG AGGTGGCCAG TTTAGCCGAG GCGCTGCGCA GTGGTTTGAG TCAAACCTAT
ATCATTAATA ATCAAGCATT ACATTCATCG CCAAGTATAG GTATCAGTTT ATTCCCGACC
GATGGCGACA GTGTTGAAGC CTTGATGAAA AACGCCGATA TGGCCATGTA CCGCGCCAAA
TCGGCGGGAC GCAATAACTA TCAATTCTTT ACTGCGGCGA TGAATACCTT GATCACTGAG
CGCCAGCAAA TTGAAACTGG CCTCAGGCAA GTGCTCGCTA ACGATGAATT ACGACTGCAT
TATCAGCCAC AAATTGATAT CCGCACTGGG CAAGTGGTCA GTGTCGAAGC CTTAGTGCGC
TGGCAACATC CCGAATTTGG CATGGTTGCG CCAGACCGCT TTATTCCCAT TGCTGAAGAG
ATCGACATGA TCATTCCTAT CGGCCAATGG GTGTTAGAAA CCGCGATGGC GCAGCTTGCC
GCTTGGCGCG CTGCGGGTGC GACCGAGCTG CGAATGGCGG TGAATCTGTC GGCGCATCAA
CTCCGCAAAG ATAGCATTGT CGCCGATATC ACCAATGTGC TTTTAAAGCA TAAGTTGGGC
AAAGGAGCAT TGGAGCTCGA AATCACCGAG AGTGTGGCGA TGCAATATCC GGAGCAGAAT
GCGCGCCTGT TAGCGGAATT GCGCCAGCAT GGTATCGAAC TTGCGATTGA TGATTTCGGT
ACGGGTTATT CCTCGTTATC CTATTTGAAA CTCTTGCCCT TAGACAGATT GAAGCTCGAC
CGCTCCTTTG TGAAGGATAT TGAAAGCGAT CCGAACGATG CTGCTATCAG TGCTGCGACC
ATTTCTATGT CCCATGAGTT GGGGCTAACT GTGGTGGCTG AAGGGGTTGA AAACGAGGCG
CAGTTGGTAT TATTGTCGAG CATGGGGTGC GACTTAGTGC AAGGGTTTTA CTTTAGTAAA
CCCTTAGCGG CAGAAGAGTG TTTCCGCTTT ATCCAGCGTA ATTTATAA
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| Protein sequence | MCQLEGLHIK SFIPYLKVNI FIALAYIVVG KLGLMIALPP GYSAAIWPAA GIAIAACILW
KEYVPWVGVF IGSLLININI GGHIHFGWLP FAISIGSCMQ AVLSAHVLGR VDHLFTLDNP
NTVIKSCLSL ALTCIVATVF GNSALVVNGT IPPSDLLGSL VNWWTGDLLG AVIFIPLTML
LFDKRTIWRA RRIQTGVPLL VGFLFCVGIY YYSDMNQRQQ LQDKFQIQSN AVISNIESFQ
EANLQQIVAL ASLFDNSEQV SEDEFVQFGK RNMLQQDGFR AWSWSPLVAA ADLPSFEAST
RSAIGGPYKV TRPQGWQTNT DGWLVPVMYI QPIIGNEAAL GLDLNSEPTR AAAIAKVRAT
LAPVMTAKIQ LAQDPNGPGG TLLIAPAFDR LGRISGFCSA VIDLQSIIND VESVKGLQWK
LSDMSAGGAL LYSNTKKSFP AFSSKLFSDK TGQYFQANLM LADRHWHIVI YQSYAVLMGD
TFSLSLLMLL LAFITCAVVG GMTLVSSGER QRIAEKVTEK TMALSKEIAR RQAFQATLVQ
SEQRYRNLFD KAPVGHVLKR LDDGQFVAIN PAFEAMTGYS LDELNQLDPW DLTPKRYQLS
ETEQLERLKQ TRRYGPYQKH YVHKNGQLVA VRLNGALVTG ADGEQLILFI VEDITEQERT
VARVNLLAQV FQQSGEGITI MDANDIIVDV NSAFSQITGY SREEIIGKNC RFLEAERTDK
GIDPQVRAAL EQTGFWQGEV WDRHKHGYDF PKWLMMSVVR DDAGAVSHYI GSFTDISERK
VSEERIHFLA HHDSLTLLPN RLSLQSRLEV VFREALASDS QIAVMFIDMD HFKNINDTLG
HHVGDQLLLE VARRLKNIVG DTDTVARLGG DEFVVALSDT NHDEVASLAE ALRSGLSQTY
IINNQALHSS PSIGISLFPT DGDSVEALMK NADMAMYRAK SAGRNNYQFF TAAMNTLITE
RQQIETGLRQ VLANDELRLH YQPQIDIRTG QVVSVEALVR WQHPEFGMVA PDRFIPIAEE
IDMIIPIGQW VLETAMAQLA AWRAAGATEL RMAVNLSAHQ LRKDSIVADI TNVLLKHKLG
KGALELEITE SVAMQYPEQN ARLLAELRQH GIELAIDDFG TGYSSLSYLK LLPLDRLKLD
RSFVKDIESD PNDAAISAAT ISMSHELGLT VVAEGVENEA QLVLLSSMGC DLVQGFYFSK
PLAAEECFRF IQRNL
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