Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal223_4056 |
Symbol | rplC |
ID | 7089674 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS223 |
Kingdom | Bacteria |
Replicon accession | NC_011663 |
Strand | - |
Start bp | 4811768 |
End bp | 4812406 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 643462934 |
Product | 50S ribosomal protein L3 |
Protein accession | YP_002359952 |
Protein GI | 217975201 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0087] Ribosomal protein L3 |
TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000000139517 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.00000000018898 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCTATCG GTCTTATTGG TCGTAAAGTT GGTATGACTC GCATCTTCAC TGAAGATGGT GTTTCAATAC CAGTTACTGT AATTGAAGTT GCAGGCAACC GTGTTACTCA AGTGAAAACT TTAGAAACTG ACGGCTACCG TGCACTTCAA GTTACAACTG GCACCAAAAA AGCCAATCGC ATCACTAAAC CAGAAGCAGG TCACTTTGCC AAGAGCGGCG TTGAAGCCGG TCGTGGTTTG TGGGAAATGC GTTTGGTAGA CGGTGAAGGC GAGGGCATTG AAGTTGGTGC TGAGCTAAAT GTTGATATTT TCGCAGACGT AGCGAAAGTA GATGTTACTG GTCAATCAAA AGGTAAAGGC TTCCAAGGCG GCGTTAAGCG TTGGAACTTC CGTACTCAAG ATATGACTCA CGGTAACTCT TTGTCGCACC GCTCGAATGG TTCTATCGGT CAGAACCAAA CGCCTGGTCG CGTATTCAAA GGCAAAAAAA TGTCAGGCCA TATGGGTGCC GAGCGTGTTA CTACTCAAAA TCTAGTTGTA GTTCGTGTAG ATGTTGAGCG TAACCTGCTA CTAGTCCGTG GCGCTGTTCC TGGCGCTACC AATGGCGACT TGATTATCAA GCCTGCCGTT AAAGCTTAA
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Protein sequence | MAIGLIGRKV GMTRIFTEDG VSIPVTVIEV AGNRVTQVKT LETDGYRALQ VTTGTKKANR ITKPEAGHFA KSGVEAGRGL WEMRLVDGEG EGIEVGAELN VDIFADVAKV DVTGQSKGKG FQGGVKRWNF RTQDMTHGNS LSHRSNGSIG QNQTPGRVFK GKKMSGHMGA ERVTTQNLVV VRVDVERNLL LVRGAVPGAT NGDLIIKPAV KA
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