| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_4004 |
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| Symbol | |
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| ID | 7086220 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | - |
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| Start bp | 4764550 |
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| End bp | 4766601 |
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| Gene Length | 2052 bp |
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| Protein Length | 683 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 643462879 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_002359900 |
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| Protein GI | 217975149 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0761872 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCTT CTGCCGCGAT AAAAGTCCCG TTATTATCTT CAGGCTTAAT CAAGTCTGTC
ATAGGGATCG CACTGGTATT TGGAATTTTG CCATCGAGTT TTGCGGCAAA TCGATTAATG
GATGTTAAAT ACCACGCCTT GGTTGACCAT CAATTGGAGC TAGAGCTGGT CTTTGAAGAT
GCGGTCACTA CGCCTGCAAT AGACTCAAAT GCCTCGCCCG CAGAGCTAGT GCTGACCTTC
GATAACACTA TCTCAGGTTT ATCTAAGGAT CGTTTACCTA TTAATCAGGT TGGGGTGACA
GACATCACCA CTGAGCAGCA AGATACTCGT CTTAAAGTCA TCTTAGGTAT GTCCAAAGTG
AAACCTTACC AAGGTTCTGT CATGGGCAAT TCATATCGAT TAACAATTAA CGATGAAGTG
GCGGGTACTC AAGCCCAAGC TGAAAACCCT TTCGTTAACA GCATTAAAAA TATCGATTTT
CGTCGTAATG ATAATGGTGG CGGTGAGCTA TTAGTCTATC TAAATAATCG CTCGGTTGCG
GCTAATGTCG AGCAAGTGGG CGCTAAGCTC GAAGTGAAGT TATATAACAC AGATATTAAT
AACGATCTTC TGTATGTTAT GGATGTGAAA GATTTCTCCA CGCCAGTAAA AAGCTTCGAG
ACATTTAAAG AAGATTTAAC GGCGCGTATT GTCGTCGATA TTACGGGTGA GTATGAATTC
ACTTACAAGC AAGAAGATAA CCTCTTTAGA CTCTCAATGA ATAAAGTCGA GAGGGCCGCC
GCCAAGAAAG ATGTTAAAAA ATACAATGGC CGGACTTTGT CGCTTAACTT CCAAAATATC
CCAGTGCGCA CTGTGTTGCA GATCATCGCC GACTATAATA ACTTTAACTT AGTCACCAGC
GATACTGTGG AAGGCAATAT CACCTTAAGA TTGGACGATG TGCCTTGGGA TCAAGCTTTA
GAATTAATTC TGCAAACCAA AGGATTAGAT AAGCGTATCG AAGGCAACAT CTTAATGGTG
GCGCCGAGCG AAGAACTGGC AATTCGTGAA AGCCAGAACC TCAAAAACAA ACAAGAGGTT
AAAGAGTTAG CACCGCTCTA TTCTGAGTAC TTGCAAATTA ACTACGCTAA AGCGGTCGAT
ATTGCTGAGT TATTGAAAAG CGCGGATTCA AGCTTACTTT CACCACGCGG TTCAGTCGCG
GTCGATGAAC GTACTAACAC AGTGTTAGTG AAAGATACGG CTGAAACGAT TGAGAACATT
CACCGTTTAG TCGAAGTGCT CGATATCCCC ATCCGCCAAG TGTTGATCGA GTCACGTATG
GTGACAGTGA AAGATGATGT CTCCGAAGAC TTAGGTATTC GTTGGGGCGT CACAGATCAA
CAAGGTAGTA AGGGAACCTC TGGCACATTA GAAGGTGCAC AGAGTATTGC CAATGGGATT
ATTCCCACTC CAGATCAGCG TTTGAACGTT AACTTACCCG CGGCAGCCAC CAATCCAGCG
AGTATTGCCT TCCATGTCGC TAAATTGGCG GACGGTACCA TTCTTGATTT GGAATTAAGT
GCGCTAGAGC AAGAAAACAA AGGTGAAATC ATCGCTAGCC CTCGTATCAC CACCTCTAAC
CAGAAGGCGG CTTATATTGA GCAAGGTGTC GAGATCCCTT ATGTGCAGTC GACTTCGAGT
GGTGCAACGT CAGTCACGTT TAAGAAGGCG GTGTTGTCTC TACGGGTTAC ACCACAAATT
ACGCCCGATA ACCGAGTCAT TTTAGATTTA GAAATCACTC AAGATTCTCA GGGTAAAACC
GTTGATACTC CAACGGGTCC CGCAGTGGCT ATCGATACTC AACGCATCGG CACCCAAGTG
CTCGTTAATA ACGGCGAAAC CATAGTGCTT GGCGGTATTT ATCAGCAAAA TCTGATCAGC
CGTGTGAGTA AAGTACCAAT TCTAGGTGAC ATTCCTCTGG TTGGTTTCCT GTTTAGGAAC
ACAACAGACA AAAATGAGCG TCAAGAGCTA CTTATTTTCG TCACCCCCAA AATAGTCGGT
GAGAAGATCT AA
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| Protein sequence | MKSSAAIKVP LLSSGLIKSV IGIALVFGIL PSSFAANRLM DVKYHALVDH QLELELVFED
AVTTPAIDSN ASPAELVLTF DNTISGLSKD RLPINQVGVT DITTEQQDTR LKVILGMSKV
KPYQGSVMGN SYRLTINDEV AGTQAQAENP FVNSIKNIDF RRNDNGGGEL LVYLNNRSVA
ANVEQVGAKL EVKLYNTDIN NDLLYVMDVK DFSTPVKSFE TFKEDLTARI VVDITGEYEF
TYKQEDNLFR LSMNKVERAA AKKDVKKYNG RTLSLNFQNI PVRTVLQIIA DYNNFNLVTS
DTVEGNITLR LDDVPWDQAL ELILQTKGLD KRIEGNILMV APSEELAIRE SQNLKNKQEV
KELAPLYSEY LQINYAKAVD IAELLKSADS SLLSPRGSVA VDERTNTVLV KDTAETIENI
HRLVEVLDIP IRQVLIESRM VTVKDDVSED LGIRWGVTDQ QGSKGTSGTL EGAQSIANGI
IPTPDQRLNV NLPAAATNPA SIAFHVAKLA DGTILDLELS ALEQENKGEI IASPRITTSN
QKAAYIEQGV EIPYVQSTSS GATSVTFKKA VLSLRVTPQI TPDNRVILDL EITQDSQGKT
VDTPTGPAVA IDTQRIGTQV LVNNGETIVL GGIYQQNLIS RVSKVPILGD IPLVGFLFRN
TTDKNERQEL LIFVTPKIVG EKI
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