| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3950 |
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| Symbol | |
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| ID | 7086713 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | + |
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| Start bp | 4708353 |
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| End bp | 4712879 |
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| Gene Length | 4527 bp |
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| Protein Length | 1508 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 643462826 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002359847 |
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| Protein GI | 217975096 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGTAGGGG AAAATTTGAG TCAACTAATC CACAAGCTAG TGCTAGGCGC GCTTTGTATC
CTAAGTTTGT GGGGGATCTC GTGCAATGGA TTAGCGCAAC CATTGAGCGC GGCTTTCACG
CAGCTTAAAT TTGAACATAT TCGCAGTGAA GATGGTCTCA ACCAGAATAC GATTACCAGC
CTGTTTATGG ACAGTGCTGG CATGTTGTGG ATTGGTACTC AAGATGGTTT GCATGCCTAC
AACGGTCATA ACTTCACCAT TTTTACCCAC TCCCCCAACG ATCCTAGCAG TATTTCAGAA
AGTTATGTCT CTGACATTAT TCAAGATTCA GAAGGCTACA TTTGGGTTTC CACGTTCAGC
CAAGGGGTCA ATCGACTCGA TTTGAGCACT GGGACCTTTG AGCACTTTGG CCAAGAACAA
GGTCTGACCG ATCCCCGCAC CACCAAACTC AGCATAGTGG GTAATACACT CTGGATTGGT
ACTAAAGCAG GACTATTTTC CCTATCGACT AAAACCAAAC GCATTACCCA GGTCAGTTTA
GGTAATAGCG TCGAGCCCTA TATCACTAGC TTAGCCAATG TTGAAAACAC TTACCTGCTG
GCAGGTACTC AAGATAGCGG CACCTTTGCC GTCAGTGCAA ATACCATCAC TCGCTTAAAC
GTGCCGCAAA ATGTCACTAC CTATCAAATT AAAGCGAACT CGGCCTACTC GATCACTTTA
GCCCTAGGTG GACAACTATG GCACTACAAC TTGGCCTCGC AGCAGGGCGA AATCCTCTGG
CAGACTGACG ATAATGTGCC TTACATTAAG GATTTTATCC AAACCGAACA GGGTGACTTT
TGGGTCGTCG GGCCTGAGGC GGGTCTCATT CAACTCGAGA GAAACGACAA AACATTCACT
GCGACCTATC ATAGGTATGA TCCTAAGCGC ACCAACAGTA TCAGTGAAAA TAACATACTG
AGTTTACTAC AAGACCCATT TGGCAATTTA TGGTTAGGCG CCAGTTATTC GGGTTTAGAT
AAAATTAATA CCCGCCGTCA GTATTTTCAG CATATTTTCG AATACACCAC GGACCTGTCG
CAACAGAGCA ACAATATTCG CACCTTATTC CGTAGCAAAG ATAATGCCCT CTGGATAGGC
ACTGAAGGCG CAGGGCTTAA GCGCATGTTA GCTAACGGTA AATATGAGCA CTATACGGAG
CGATTTGCTA ACGCCTTAGG GGTGCATCAA CGCAATTTAA ACCTCACCCT GCGAGATATT
GCTCAAGACA AAGCGGGCGT GCTCTGGTTT GCCACTAACT ATGGACTCGG TCGGCTATCG
CCAGAGGGAG ATTTCCAATT ACTCAAGGTC ACAGCAAGTA CAGACCAAGG CTCTGAAGCC
AATTACATCC GAAGTTTAGA AATTGATGAT CAAGGCCATC TCTGGGTAGC AACGACCCAC
GCCCTCTATC GCAAGGCTAT AGATACCGAT GAATTTACTT TTATCTCATT GGCACATATT
GATAATTTCT ATCCGGCACA AAACCAGTTT TTAATCCTAA GAGCGCACAA AAATACGCTT
TGGATAGGCA CACTCGATGG TCTACTGAAA CTGGATATGA AAACGGGCAT AGGTAAATCT
TACTTCCACC AATCCTCAGA TAAGAAAAGT CTAATTAACA ATCGTGTCCG CGATATTCTA
GTGACACACG CAGGCGAGGT ATGGTTCGCC ACCCATGGCG GGATCAGTAA GTTACCCTCA
CAAGATGCCG ATGCAGGCTT TACTCATTAC ACCCGCGAGC AGGGATTACC AAGCGATACC
ATCTACGCCT TACTTGAGGA CCAAGAACAT AATATTTGGT TTAGCAGCAA TGCTGGCATA
GGCAAACTTA ACCCTAAAAC CAATCGCGTC ATCATATTCA ACGAACAAGA AGGATTGCAG
GCACTGGAGT TTAACGGCGG CGTAAAACTG CAGGACAGCG ATGGCGATCT TTGGTTTGGT
GGCATTAATG GCATCAATCG TTTCAATCCC CAGTCGATTC CAGATCAACG ACCCGATGTT
AAAGTCGCGC TCACGGGCTA TAGCATTGCG GGAAAAGGCC ACACGATTCT CGATTTAAGC
CGCCCCCCGA GCATAGTGAT GGACTATAGC GATCAGCTAG TCAGTTTTGA GGTGACCTCA
TTAGATTTCA GCTACACGGG TAAAAACCGT TTCAGCTATT ATCTCGAAGG GTTTGATAAC
AGATGGCATG AGCTACCCAC AGGCAATGAA ATCACCTTTA CTAACATCAA TCCTGGCCAT
TACCGATTAC ATGTTCGTCA TGGGTTGCAA TACAACTCAG AAGGTGACTA TGCGCTGCTT
GTCGATCTGA ATGTGCAAGC CCCCTTCTAT CGCTCTCAGT TAGCTTATGT ACTTTACAGC
TTACTCACTT TAGGACTGCT GGCTTGGGTC ATTATCTGGC GTAGGAACAA ACGCCAACAA
CAACGTGAAT TTGAAACCAG TATCCGCGCC TCAGAAGAGC GGCTAAAGCT GGCACTTTGG
GCATCTGGCG ATGGCATGTG GGACTGGAAC ATAGCCGAAA ACCAAGTCTA TCGTACCAAT
ATGGACTCTT CGATTCCCCA TTGGAACAGC AGCAATATTG CCCATGAGAG CATGCACTCT
GAAGACAGAG AGAGATTCAA ACTTGAGCTA AACGAGCACC TTCAAGGCCG CTCGCCTTTC
TTCGAAGCTG AGTACCGTGT CGAACGCTCT CCGGGTAATT GGGTGTGGAT TTTAGACCGT
GGCAAAGTGG TTGAAAAAGA TAGCCTAGAT AACCCAATCC GCATGACAGG GACTAACCGT
AATATTACCT CTCGTAAACT GATTGAGAAC GAGCTGGTAT TGTCCTCGCA AGTGCTCAAC
AGCATGAATG AAGCGGTTGT CGTTGCGGGC CTAGACTATC GCATTCGCTC GGTGAACCCC
GCCTTTTGTG CCATTACTGG CTACACAGAG CGCCAAATCA CCGACAGGCA TTTCATTCAT
TTAGCCTTTG GGCGCCAACA GCGTGAATTG TTCAATACCA TTGAACAACA GCTACTACGC
CATAAACATT GGGTCGGGGA ACTGTGGATC CGCAATAAAC AACGGCAGGC GATTTTAGTC
TGGCTTGAGA TCAACCAAGT TATCGATATT AAAGGTGAAA CCAGTCACTT CGTCGCGGTA
TTTACCGACA TCACACAGCG GAAAAAAGCC GAAGAAGATC TGCGTTTCCT CGCCAGTTTC
GACACCTTAA CGGGCCTGCC AAACCGAACC TTATTCCAAG ACAGGCTCAA TCACGCGATA
ACCCAAGCGC ATAGGGCGAA CAATATCGTC GCCTTACTGT TTTTAGATCT CGACCGCTTT
AAACATATCA ACGACTCCAT GGGGCACCAT GTCGGCGATT TACTGCTCAA AGCAGTCGCC
AGAAGACTGC AAAATGCAGT GCGTGATGGC GATACGGTCG CACGCCTAGG TGGTGATGAA
TTTACCATTA TTTTAGAAGG GGTGGCGAAA ACCAAAGCCG CCACTTTGAT CTCAGAGAAA
GTACTCAGAG CATTCCAAAC GCCCTTCTTA TTGGACGATA AAACGCTAAC CATTTCGACC
TCCATCGGCA TCAGTCTCTA TCCAAATGAT GCTGATAATG CCGACTCGCT GATTAAATTT
GCCGATACAG CCATGTACCA CGCGAAATCC TCAGGTAGAA ATAACTTCCA GTTTTATACT
TCTAAGTTAA ATGAAATTGC CACTCGCCAT GTGCAACTCG AAAGTGGGCT AAAAGAGGCG
ATTCAGCGCA ACGAATTGAG CTTAGTTTAT CAGCCTAAGT TCTGTTTAAA GAATGGTTCA
CTCACTGGAA TAGAAGCGCT TTTACGTTGG CATCACACTG AACTTGGCCC CATTTCCCCC
GTCGAGTTTA TTCCGCTGGC GGAAGAAACC GGCATCATCA CTCAAATTGG TCATTGGGTG
ATCAATCAAG CCTGCCAGCA ATTAGCCGAA TGGAATAGCT TAGGATTCAA CGGTATCACA
GTCGCCGTAA ACCTATCGGC TCGCCAACTT AAGGCCGATA TTATCTCCAC CATAGAAGTT
GCATTAGCGG TTTCAGGTCT CCCGGCACAA TCCCTTGAGC TTGAACTGAC AGAGTCGATG
ATCATGGGCA ATCCGCAGGA GTCAGTCAGT ATTCTCTCTA AACTCAAAGC CCTAGGCTTG
ACCATAGCGG TGGATGATTT TGGGACGGGT TATTCGAGCC TAAGTTATCT CAAACGCTTC
CCGATAGACA CGCTGAAAAT CGATCGAGAG TTCGTCAGAG ACATCACCAA TGATCCCGAC
GATGCGGCCA TCACCAGCGC CATTATCGCC CTCGCCCACA GTTTAGACCT CAACGTTGTC
GCCGAAGGCG TAGAGACCCA AGAACAGCTC AACTTCTTGG CGATGCAGGG TTGCGATCAA
GTACAAGGTT TCTTACTCAG TAAACCCTTA AGTGGCGCGG ATTTTTTAAC TTTACTCAAG
AATCAATCTA AGCCACAGCC GATTTGA
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| Protein sequence | MVGENLSQLI HKLVLGALCI LSLWGISCNG LAQPLSAAFT QLKFEHIRSE DGLNQNTITS
LFMDSAGMLW IGTQDGLHAY NGHNFTIFTH SPNDPSSISE SYVSDIIQDS EGYIWVSTFS
QGVNRLDLST GTFEHFGQEQ GLTDPRTTKL SIVGNTLWIG TKAGLFSLST KTKRITQVSL
GNSVEPYITS LANVENTYLL AGTQDSGTFA VSANTITRLN VPQNVTTYQI KANSAYSITL
ALGGQLWHYN LASQQGEILW QTDDNVPYIK DFIQTEQGDF WVVGPEAGLI QLERNDKTFT
ATYHRYDPKR TNSISENNIL SLLQDPFGNL WLGASYSGLD KINTRRQYFQ HIFEYTTDLS
QQSNNIRTLF RSKDNALWIG TEGAGLKRML ANGKYEHYTE RFANALGVHQ RNLNLTLRDI
AQDKAGVLWF ATNYGLGRLS PEGDFQLLKV TASTDQGSEA NYIRSLEIDD QGHLWVATTH
ALYRKAIDTD EFTFISLAHI DNFYPAQNQF LILRAHKNTL WIGTLDGLLK LDMKTGIGKS
YFHQSSDKKS LINNRVRDIL VTHAGEVWFA THGGISKLPS QDADAGFTHY TREQGLPSDT
IYALLEDQEH NIWFSSNAGI GKLNPKTNRV IIFNEQEGLQ ALEFNGGVKL QDSDGDLWFG
GINGINRFNP QSIPDQRPDV KVALTGYSIA GKGHTILDLS RPPSIVMDYS DQLVSFEVTS
LDFSYTGKNR FSYYLEGFDN RWHELPTGNE ITFTNINPGH YRLHVRHGLQ YNSEGDYALL
VDLNVQAPFY RSQLAYVLYS LLTLGLLAWV IIWRRNKRQQ QREFETSIRA SEERLKLALW
ASGDGMWDWN IAENQVYRTN MDSSIPHWNS SNIAHESMHS EDRERFKLEL NEHLQGRSPF
FEAEYRVERS PGNWVWILDR GKVVEKDSLD NPIRMTGTNR NITSRKLIEN ELVLSSQVLN
SMNEAVVVAG LDYRIRSVNP AFCAITGYTE RQITDRHFIH LAFGRQQREL FNTIEQQLLR
HKHWVGELWI RNKQRQAILV WLEINQVIDI KGETSHFVAV FTDITQRKKA EEDLRFLASF
DTLTGLPNRT LFQDRLNHAI TQAHRANNIV ALLFLDLDRF KHINDSMGHH VGDLLLKAVA
RRLQNAVRDG DTVARLGGDE FTIILEGVAK TKAATLISEK VLRAFQTPFL LDDKTLTIST
SIGISLYPND ADNADSLIKF ADTAMYHAKS SGRNNFQFYT SKLNEIATRH VQLESGLKEA
IQRNELSLVY QPKFCLKNGS LTGIEALLRW HHTELGPISP VEFIPLAEET GIITQIGHWV
INQACQQLAE WNSLGFNGIT VAVNLSARQL KADIISTIEV ALAVSGLPAQ SLELELTESM
IMGNPQESVS ILSKLKALGL TIAVDDFGTG YSSLSYLKRF PIDTLKIDRE FVRDITNDPD
DAAITSAIIA LAHSLDLNVV AEGVETQEQL NFLAMQGCDQ VQGFLLSKPL SGADFLTLLK
NQSKPQPI
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