Gene Sbal223_3938 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbal223_3938 
Symbol 
ID7086701 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS223 
KingdomBacteria 
Replicon accessionNC_011663 
Strand
Start bp4692155 
End bp4693939 
Gene Length1785 bp 
Protein Length594 aa 
Translation table11 
GC content48% 
IMG OID643462814 
Productdiguanylate cyclase with GAF sensor 
Protein accessionYP_002359835 
Protein GI217975084 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCTGA CCATTATCGG GGTGAGCTCA TTTTTTGCTG TGTTAACTAT GCTGGTGCAG 
TTGATTTGGA ACTATCAGGA TAGTATCGAC AATGCCACGT CGGATATCCG CGAGTATTCA
GAATCTATTC TGCCGAGCGT GGCGAAGTCG CTGTGGGACG TTGACCGCAG CCTGCTATCT
GATTTGCTCT CTGGTTTAGG GATGATGCCG TTAGTGTCGA GTGTGCATTT AGACAGTATC
GACGGTGTCA CTATGCAGTT GGGTAAACCG CTGTTAACCG ACGACGAGTC GCAAACCCTG
TTTCATTATC CCGTGACTTA TCAAGATCAA CTGATCGCAA CCTTAACCGT AGGCTTAGAC
ACCAACCAGC TTTACTACGA GCTGTGGCGG CAGTTGATTT TTATTGTGCT CGGCAATGGC
TTAAAGACCC TGCTGATGAT CTATTTGATC TTGACCTTAG TGCGACTCAT GGTGACGGAT
AGATTGTCAG CATTGGAAGA TTTTACTAAT AAAATCAATC TAAAATCGCT AAAGAAGTTA
TCTGTGCCCG AGACGGTGAC CGCCAGTCCT GACGAGATTG CCCATGTGGC ATTGTCGCTT
AAGGCCATGT ATCAAAGGAT ACGCAACGAC CTCGCTATCA ATAAACGTCA TCAACGCGCG
TTACAGCAAC AGCAGCATTT GTTGTCGGAT TTAGTGAAAG AGCGGACCAA AGAACTGGAC
TGGCAGTCGC AGTCGAATCA GTTGCTGGCA GAGATTTCGT TGCAATTTTT AAGCATAGAT
ACCTGCAATG TGGATAAAAC CTTAGCTGAG GTGTGCCGCA AAATAGGTCA GTTGTTTGAT
GTTGAAAGGG TGAGTATTCT CGAATTTCAT CAACAGCATG CCTATTACCG CAGTTTTTGG
ACCAGCGAGT TACATGCTAA CAAGGTCCAA GGGATTTCGG TGGACAACAT TACTCAGCTT
GCTAAAAAAT TCGAAACTGA ATCGACCTTA GTGATTGAGG ATCTTGAGGC GTTAAAGGCA
TTGTCACCGC AGGAATATGA AGTGATGAAA TCCGTGGGCA TTTGCTCTAT TGCTGCCTTT
GCGATTAAAA ATGCCGGAGA GTTATTGGGA TTACTCTCGC TGTCGACGGT GTCGCGGCCC
TTGAATTGGA ACGCCCAGAA AAAAAATATG CTGACTCAGT TTGCCTCCGC ATTGAACGAG
TTACTGCTGC GCGAGCAAAA AGAGCGGCAG ATGATAGTGC TGCAACAAGC GCTGGTTTCT
GCCAATACTC AATTGAAAGA AATGGCCGAA ACCGATGAGT TAACGGGCTT AGCCAATAGA
CGCCCCTTTA CCGAAAGATT AGAAACCGTA CTACAGGCGG ATACTCCTGC GGGACTGTTT
ATGTTGGACG TCGATTATTT CAAATCCTAC AACGACACTT ACGGTCATCT CGAAGGTGAT
GTCGTGCTTA AGCGTGTGGC AGATGCCTTA GCGCAGTGCG ATATCCTGCC GCACAATGCT
TTATTGGCGC GCATCGGTGG CGAAGAGTTT GCCTTAGTCG TTGAGCATGT CACGCCGGCA
CAGTTAACGG CCATTGCCAC GCAGTTGTGT TATCTCGTCG AGCAACTCAA TATACCCCAT
CAAGCATCGC CGTTGGCTGT GGTGACTATC AGTATTGGCA GCGTGTTTTT GCCATTAGAT
AAGGTCTCGG GGCTTAAGAT GGCCGACGTG TTACGCCGCG CCGATGTTTG CCTCTATCGC
GCGAAGGATA AAGGGCGAAA CAGGGTCGAG GTTGAAGTGA TTTAA
 
Protein sequence
MTLTIIGVSS FFAVLTMLVQ LIWNYQDSID NATSDIREYS ESILPSVAKS LWDVDRSLLS 
DLLSGLGMMP LVSSVHLDSI DGVTMQLGKP LLTDDESQTL FHYPVTYQDQ LIATLTVGLD
TNQLYYELWR QLIFIVLGNG LKTLLMIYLI LTLVRLMVTD RLSALEDFTN KINLKSLKKL
SVPETVTASP DEIAHVALSL KAMYQRIRND LAINKRHQRA LQQQQHLLSD LVKERTKELD
WQSQSNQLLA EISLQFLSID TCNVDKTLAE VCRKIGQLFD VERVSILEFH QQHAYYRSFW
TSELHANKVQ GISVDNITQL AKKFETESTL VIEDLEALKA LSPQEYEVMK SVGICSIAAF
AIKNAGELLG LLSLSTVSRP LNWNAQKKNM LTQFASALNE LLLREQKERQ MIVLQQALVS
ANTQLKEMAE TDELTGLANR RPFTERLETV LQADTPAGLF MLDVDYFKSY NDTYGHLEGD
VVLKRVADAL AQCDILPHNA LLARIGGEEF ALVVEHVTPA QLTAIATQLC YLVEQLNIPH
QASPLAVVTI SIGSVFLPLD KVSGLKMADV LRRADVCLYR AKDKGRNRVE VEVI