| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3894 |
|---|
| Symbol | |
|---|
| ID | 7086657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 4620977 |
|---|
| End bp | 4621897 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 643462771 |
|---|
| Product | tyrosine recombinase XerC |
|---|
| Protein accession | YP_002359792 |
|---|
| Protein GI | 217975041 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4973] Site-specific recombinase XerC |
|---|
| TIGRFAM ID | [TIGR02224] tyrosine recombinase XerC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.00533729 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACGC AAACAGCCGA AGTGTCGGCG CTTAATACTC AATGGTTACA AACCTTTGAA
CGCTATCTGA GTACCGAGCG GCAGTTGTCG GCCCATACAG TACGTAATTA CCTTTACGAG
CTTAATCGCG GAAGCGATCT CTTGCCCGAA GGCGTGCATC TACTCAATGT GAGCCGCGAG
CATTGGCAGC AAGTATTGTC TAAATTGCAC CGCAAAGGCT TAAGCCCGCG ATCGCTTTCA
CTGTGTTTAT CTGCGGTAAA ACAATGGGGT GAATTTCTGC TGCGCGAAGG TGTGATCGAG
CTTAATCCTG CCAAAGGCTT AAGTGCTCCC AAACAAGCCA AACCGCTGCC GAAGAATATC
GATGTCGATG CCATCAGTCA CTTGCTGGAC ATTGAAGGTA CAGATCCCCT AAGTCTGCGG
GATAAGGCCA TGATGGAGTT GTTTTATTCC AGTGGCTTAC GTTTAGCGGA ACTCGCCGCG
CTTAATTTAT CCAGTGTGCA ATACGATTTG AAAGAAGTGC GAGTCTTAGG TAAAGGCAAT
AAGGAACGTA TCGTCCCTGT AGGTCGTTTG GCGATTGCTG CTTTGCTGAA TTGGCTCAAT
TGCCGAAAGC AGATCCCCTG TGAAGATAAC GCCTTATTTG TGACCGAAAA GGGCAAGCGA
CTCTCCCATC GTAGTATTCA GGCGCGGATG GCGAAATGGG GGCAAGAACA GGCATTATCG
GTGCGCGTAC ATCCACATAA ACTGCGTCAT TCCTTTGCTA CTCACATGTT AGAAGCGAGC
GCCGATCTGC GGGCGGTGCA AGAATTATTG GGCCATGCGA ACCTAGCGAC CACGCAAATT
TATACCAGTT TGGATTTCCA ACACTTAGCT AAGGTGTATG ATAACGCCCA TCCTAGAGCG
AAAAAAACAC AGGATAAATA A
|
|---|
| Protein sequence | MSTQTAEVSA LNTQWLQTFE RYLSTERQLS AHTVRNYLYE LNRGSDLLPE GVHLLNVSRE
HWQQVLSKLH RKGLSPRSLS LCLSAVKQWG EFLLREGVIE LNPAKGLSAP KQAKPLPKNI
DVDAISHLLD IEGTDPLSLR DKAMMELFYS SGLRLAELAA LNLSSVQYDL KEVRVLGKGN
KERIVPVGRL AIAALLNWLN CRKQIPCEDN ALFVTEKGKR LSHRSIQARM AKWGQEQALS
VRVHPHKLRH SFATHMLEAS ADLRAVQELL GHANLATTQI YTSLDFQHLA KVYDNAHPRA
KKTQDK
|
|---|
| |