| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3853 |
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| Symbol | |
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| ID | 7088888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | - |
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| Start bp | 4571580 |
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| End bp | 4576052 |
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| Gene Length | 4473 bp |
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| Protein Length | 1490 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 643462732 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002359753 |
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| Protein GI | 217975002 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.982948 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000000550616 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAAACAA AAATAATTAG AACAATTCTG ACATGTTTCA TCCTTTCATT GACTTGCGTC
CACTCGGCTT GGGCGGGCGG TTTTGTGCAG CGAGTTTTTA CTGATAGGGA CGGTTTAGCG
GTCACCAGTA TCCGAGGCTT GGCCTTAGAT GATTACGGTT TTGTATGGGC CGCGACTGAG
CAGGGCTTGT ATCGAGTCAG TAATTCTAAG GTGCGGCGTA TCGATAAAAT CGGCACCGAA
TCGCGACTGT CAGATGACTT TTTAACCTCA GTAGTAAACA TCGACCGTGA CAAGTTATTG
GTTAGCACCA ACGCCGCAAT TTACCTCTAC GATATTGTCC AAAATCAATT TACCGCCTTT
GGTTCTCCCT ATTTATTCCC GCAGTTTCCC GGTGGTGCGC TGGTCTCGGC AGCCCGAAAG
AATAGTAAAA CATGGCGATT ATTAATTGAT AATGGCCAGA TTTATGAATT CTCCCCTTCA
AAGTCCGAAC TGCGCCTCAT TACTCAGTTG CCGGTTAATC GCGATCTTCC TTGGCGCAAA
TTGCTGGTCA TGCCTAACGG TCAAATGCTG GTCGCGGGAA CCTTGCAATT AGAGTTGCTG
GAGCAAAATG GCGAGCGGGT GTTCCAATAC TCTTGGACTG AATCTATGGG CAGTATTCTC
GATATGTTAG AGGATTCTCA GCATAGGATC TGGATTGCGA CCGGACGCGG CGTTTATCAA
TTAGATCAAA TTTCTAGGCA AATTATCCCC GTGCCAGAAT TGCCCGATTG GAGCACAGTG
ATCATTGAGG ATGCTAAAGG ATATTTATGG TTTTCCAGTC GTATCGGTTT ATTGAAATGG
TCGCCCGAAA CGCGGCAGAT TGAAAACTAT CAAAAAGAGT TGAAGGCTGA GGCCAACATG
GAAACGCTGA AAGCCATGTT GTTTGATGAT GCTGGCTTGA TGTGGGTCGG AGGCTCAGGC
GATGGATTGG CTTTATTGGC GTCACAGCCT GATTTCATCC TCGATACTTA TACTGGCGAT
GAACCCTATC AACTGAGCGA TGCCATGACT TGGTCAGTGC ATGCCAGTGA TGAAGGGGTT
TGGTTAGGTT CTTCCAGTTT AGATTTTATT GCAAAAGGCA GTAGCAAAGC GTTTAACGTG
CCAATTGAGG GATTTAATCC CCATGAAAGT ATTTATGATA TCAGTGCGTT TGAGGGACAT
TATTTACTGT TATCGACGAC CAGCGGCCTC TTTGTTGTCG ATAAAGACAC TTTGCAAGGC
AGTAGCTTTT CTAAATGGAC TCACGGTAAT GATGATTTTA AAAATAAGCT TATTTATAAA
ACCTATCGTG ACCCTAAACT GAAAGGACGT GTTTGGATTG CGACCACAAC AGGGCTGTAT
TTTTGGGAAA TGGGACTGTA CGAACCTCAG CCCTTTGATA TTGATAAGTC ATCGAACAAG
TTTGACGGCC CTAAGCGCCC CGTGATCCGC ACTATTTATC GCACCTCCGA CGGTCGTTTG
TGGGTGGGCG GTAAAAAAGT CTTTGGTTAC ATCGACAGCC AAAATGAGTT TCATGATCAG
CGGCAGTTGT TTAATGCTTT TGCTGCACAA CCCACGGTCA GTCACATTGA AGAAATGTCA
CCTGGGGTGA TCTGGTTTGG CTCCTATGAA AAAGGTTTAT TTGAATACCA TCAGCAAACG
GGATCGTTAA TTTCACTGAC CTCCGAGTGG CAATTAAATT GTAGTTCAGT GTTTTTTATT
CAAAAAACGC CCAAGTCTAA TCTTGTGGGC TGCTCGGATT CTTTGGTGCG ACAGGATATC
CAAACGGGCG AGATTGCTAT GTTTAATCAA CTCGATGGTT TAATTTCCGA TGAGATGAAC
GAAGGCGCCT ATTTTTACTC ACCTAAAACA GGCTTTTACT TAGGCACGCC CGAGGGCGTG
ATGCGACTCG ATGTCGATAG GCTGGCCAAT CGCATTACCG ATGACCATGT GATGCTTGAA
TCTGTCTCTG TGTACTATAA CAACACGACC GAAGTGTCCC TGTTGCCGCG TAACCTGATG
ACCATAAAAC CCGAAGCCAA TATGGTCAGT TTTCAAATCA CTAACTTAGA TTATCTCGAT
GATTCGCCCA TCCAATTTAA ATACCGATTA CGTTATCAAG ATGAAGAGAG TAATTATGTG
CTGCTTCAGG GGGAGTCGCA GATTAACCTC GCAGGTTTAG CTTCGGGTGG TTATGTTTTA
GATATTTTAA GTCAGGTCAA TGGAATATGG TCCGATAAAC CTTTTACCTA TCCCTTTTAT
GTTGAGCAGC ATTGGTGGTT ATCCCAAGGT TTTAAAGGCA TTTTACTGCT GTTATTTTCT
ATTATTGCCT TAAGTCTTGC TTGGTATCGG CAACGTCAGA TCAATACCTT TAAGCAGATG
AATCAGGCAT TAACTGAGAG TGATGACAGG CTGAGGCAAT CTTTGCGCGG TAGTGACTCG
GATCTCTGGG AATGGCATAA AAATACTCAG GCATTTCATC TTGATAATCG CGGTGCCGTT
CTCGGTACCC ATGCCAATGA GATTGTTGTG AGCTTAGCAG AGTTGCCTGT GCATCCACAG
GATAGGGAAA AAGCGCTCGC TCAGTGGGAT AGCATGATAT CGGGGGAGAT AGATAGATTC
GAAGCCGAAT ATCGTTATCA GCGCAAGGAC GGTAATTGGG GCTGGTTAAG GGTAAGAGGG
CGGCCCGTTG CCCGTAATAA GCACTCCAAT GAGATTGAGC GGGTCGCGGG TATTTATAGT
GATATTACCG TGCAACGACA GTTAGAAGAT GAAGTGAATT TACTGGCAAA AGCGTTTGGT
AACACATCTG AAGGTGTACT GATTTTAGAT GTCGAAGGCA GTATTCGCGT GGCGAATTAC
GCGGCACAAC AGATTATTGG TATCGATTCT ACTGATTTAG TTGGCCAATC TTTTACCCAA
TTTGTACAGA TGAATGACGG TTTGGCATCG GAAATTAAGC AACTCCTCAG TGATAGCCAG
TCTTGGACGG GCGAGCGTGA GTTAATTAAC GCCAGTCAGC AACCCTGTCC TGTGTGGCTA
AACGTATCTG TGATGCAAAG TGCCAACGGT AAAGTGACCC ATTATGTGGT GGTATTCTCG
GATATTACCG AACGTAAACA AACCGAAGCC GATTTACGCC GCCTAGCCAA TTACGATGTG
CTTACGGGAT TGCCAAACCG CTCCTTATTT TCTAGTCGCC TATTACAGTC GATTCAGGCC
GCGCAGCAAA CGGGCGAGAA ATTGGCGCTA CTGTTCTTGG ATCTCGATAG ATTTAAGCAT
GTTAATGACT CCTATGGTCA TAGCATGGGC GATGCCTTAC TGGTCGAAGC CTCAAGCCGA
CTACAATCCT GTATTGCTAG CGAGCATATG CTCTGCCGCT TTGGCGGCGA TGAATTTGTG
ATTTTACTCA GAAATGCCAA CAGCATTGAT GATATCAACC ACATTGCCGA GCGGCTGCTG
GAACAAATCG TGGCGCCTTT TAAGTTATAT GGCCGTGAGT TTTATATTTC GACCAGCATT
GGCATCAGTA TTTGGCCCGA TGATGCGGTT CAGCCTGAAG CCTTTATCAA GAATGCCGAT
CTCGCTATGT ACCACGCCAA AGAAGAAGGG CGGGGAAATT TCCAATATTA TTCCTCTGAG
CGTAATGCCC AAGCTCTCTA TCATTTACGG CTTGAGGCCG ATTTACGTAA AGCCATAGAG
CGGCAAGAGT TCGAGCTTTA TTACCAGCCG CAAATTGATA TTTTGCGTAA CGATAAGCTC
ATTGGAATGG AAGCATTAAT TCGCTGGAAA CATCCGCTGG ACGGCTTTAT TCGTCCCGAT
ATTTTCATCA AAGTCGCCGA GGCCTGCGGT TTAATTGTCG ATATTGACCG CTGGGTGTTA
AGGCAAGCCT GTGTGCAGGG AGCACAGTGG GCGAAACGTT ATGGCGCTAC CTTTAAGTTG
TCGGTTAATA TTTCGGCGGT GCATTTCAGG CAGCCCGATT TTATTGAAGA CATACAAAGA
ATTCTGCATG AAACCCAAAT GCCGACGGCG TCTTTAGGCT TAGAAATCAC TGAAGGCGTG
TTGATGAAAG AGCTGCACGT CGCTAAAGAT CATCTCTCGC GATTGAAGTC CTTGGGGATT
GAAGTTGCCA TTGATGACTT TGGGACGGGT TATTCTTCTC TTGCTTATTT ACGCCATTTT
GAGGTGAATA CCTTAAAAAT CGATCGCTCC TTCTTGATTG ATATCGCCAC CAATAAGGCC
GATCAGGCGA TTGTGAGCAG TATTATTGAA TTAGCCCGTA ACCTTAAATT AAATGTGGTT
GCCGAAGGGA TTGAGACGGT TGAGCAGTTA GAGCAAGTAT TTAGCCGCGG CTGTTATATT
ATTCAAGGGT ATTATTTTGC TAAGCCTATG TGCGTGGCTG ATTTTGAACG CTATTTAGAA
ACAGATAACA GAATCGTCGC TATTGAGCAT TAA
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| Protein sequence | MQTKIIRTIL TCFILSLTCV HSAWAGGFVQ RVFTDRDGLA VTSIRGLALD DYGFVWAATE
QGLYRVSNSK VRRIDKIGTE SRLSDDFLTS VVNIDRDKLL VSTNAAIYLY DIVQNQFTAF
GSPYLFPQFP GGALVSAARK NSKTWRLLID NGQIYEFSPS KSELRLITQL PVNRDLPWRK
LLVMPNGQML VAGTLQLELL EQNGERVFQY SWTESMGSIL DMLEDSQHRI WIATGRGVYQ
LDQISRQIIP VPELPDWSTV IIEDAKGYLW FSSRIGLLKW SPETRQIENY QKELKAEANM
ETLKAMLFDD AGLMWVGGSG DGLALLASQP DFILDTYTGD EPYQLSDAMT WSVHASDEGV
WLGSSSLDFI AKGSSKAFNV PIEGFNPHES IYDISAFEGH YLLLSTTSGL FVVDKDTLQG
SSFSKWTHGN DDFKNKLIYK TYRDPKLKGR VWIATTTGLY FWEMGLYEPQ PFDIDKSSNK
FDGPKRPVIR TIYRTSDGRL WVGGKKVFGY IDSQNEFHDQ RQLFNAFAAQ PTVSHIEEMS
PGVIWFGSYE KGLFEYHQQT GSLISLTSEW QLNCSSVFFI QKTPKSNLVG CSDSLVRQDI
QTGEIAMFNQ LDGLISDEMN EGAYFYSPKT GFYLGTPEGV MRLDVDRLAN RITDDHVMLE
SVSVYYNNTT EVSLLPRNLM TIKPEANMVS FQITNLDYLD DSPIQFKYRL RYQDEESNYV
LLQGESQINL AGLASGGYVL DILSQVNGIW SDKPFTYPFY VEQHWWLSQG FKGILLLLFS
IIALSLAWYR QRQINTFKQM NQALTESDDR LRQSLRGSDS DLWEWHKNTQ AFHLDNRGAV
LGTHANEIVV SLAELPVHPQ DREKALAQWD SMISGEIDRF EAEYRYQRKD GNWGWLRVRG
RPVARNKHSN EIERVAGIYS DITVQRQLED EVNLLAKAFG NTSEGVLILD VEGSIRVANY
AAQQIIGIDS TDLVGQSFTQ FVQMNDGLAS EIKQLLSDSQ SWTGERELIN ASQQPCPVWL
NVSVMQSANG KVTHYVVVFS DITERKQTEA DLRRLANYDV LTGLPNRSLF SSRLLQSIQA
AQQTGEKLAL LFLDLDRFKH VNDSYGHSMG DALLVEASSR LQSCIASEHM LCRFGGDEFV
ILLRNANSID DINHIAERLL EQIVAPFKLY GREFYISTSI GISIWPDDAV QPEAFIKNAD
LAMYHAKEEG RGNFQYYSSE RNAQALYHLR LEADLRKAIE RQEFELYYQP QIDILRNDKL
IGMEALIRWK HPLDGFIRPD IFIKVAEACG LIVDIDRWVL RQACVQGAQW AKRYGATFKL
SVNISAVHFR QPDFIEDIQR ILHETQMPTA SLGLEITEGV LMKELHVAKD HLSRLKSLGI
EVAIDDFGTG YSSLAYLRHF EVNTLKIDRS FLIDIATNKA DQAIVSSIIE LARNLKLNVV
AEGIETVEQL EQVFSRGCYI IQGYYFAKPM CVADFERYLE TDNRIVAIEH
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