| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3844 |
|---|
| Symbol | |
|---|
| ID | 7088879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 4556436 |
|---|
| End bp | 4557239 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 643462723 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_002359744 |
|---|
| Protein GI | 217974993 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.000447473 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGATGGAC TCACTGGCAA GGTCGTGATT ATCACGGGTG CCTCAGAAGG TATTGGTCGA
GCACTCGCTG TGGCAATGGC GCGAATGGGC TGCCAGCTCG TGATCAGTGC GCGCAATGAA
ACACGTCTCG CTTCACTCGC CTTAGAAATC GCTAATTATG GTTTACCTCC CTTTGTATTT
GCTGCCGATG TTTCTCGTGC TGAACAGTGC GAAGCCTTAA TTGAAGCCAC GGTCGCGCAT
TACGGACATC TCGATATTTT AATTAATAAT GCCGGCATGA CCATGTGGTC ACGTTTCGAT
GAGCTTACTC AACTGTCTGT ACTCGAAGAC ATTATGCGGG TGAATTATCT TGGACCTGCG
TATTTGACCC ATGCCGCTTT ACCCCATTTA AAAGCCAGTA AGGGCCAAGT GGTTGTTGTG
GCGTCAGTCG CTGGATTAAC GGGCGTACCC ACTCGTAGCG GTTATGCTGC ATCTAAACAT
GCCGTGATTG GCTTTTTCGA TTCACTGCGG ATTGAGCTCG CGGACGATAA TGTGGCGGTG
ACGGTAATTT GCCCTGATTT TGTGGTGTCA CAAATTCACA AACGCGCCCT TGATGGTGCG
GGTAATCCTT TAGGCAAGTC ACCGATGCAA GAAGCTAAGA TACTGACGGC CGAGCAATGC
GCCAATATGA TGTTACCTGT GATTGCGACT CGAGGCCGAC AACTTATCAC TTCACTTCGC
GGTCGTTTGG GGCGTTGGCT TAAGCTGATC GCGCCAGGTT TAATCGACAA AATTGCCCGC
AGGGCGATCG CCTCCGGGCA CTAA
|
|---|
| Protein sequence | MDGLTGKVVI ITGASEGIGR ALAVAMARMG CQLVISARNE TRLASLALEI ANYGLPPFVF
AADVSRAEQC EALIEATVAH YGHLDILINN AGMTMWSRFD ELTQLSVLED IMRVNYLGPA
YLTHAALPHL KASKGQVVVV ASVAGLTGVP TRSGYAASKH AVIGFFDSLR IELADDNVAV
TVICPDFVVS QIHKRALDGA GNPLGKSPMQ EAKILTAEQC ANMMLPVIAT RGRQLITSLR
GRLGRWLKLI APGLIDKIAR RAIASGH
|
|---|
| |