Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal223_3424 |
Symbol | rumB |
ID | 7086038 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS223 |
Kingdom | Bacteria |
Replicon accession | NC_011663 |
Strand | - |
Start bp | 4071123 |
End bp | 4072295 |
Gene Length | 1173 bp |
Protein Length | 390 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 643462310 |
Product | 23S rRNA methyluridine methyltransferase |
Protein accession | YP_002359331 |
Protein GI | 217974580 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTGCTG CTATTGTGAA TGCCGTTAAG CAATGTGGTT ATTTTAATCA AGGTCAGTGC CTTTCTTGCC GGCATATTCA GCAGCCTCTA GCGCAGCAAG TAGCGGTTAA AACCCAAACG TTACTGCAAT TACTCGCGCC TTTTATTCCC GCAAATTCGG CAGAACTTTT TCTGCCTCCC ATTACTGGCG ATGACAGCGG CTTTCGTAAT AAAGCCAAAA TGGTAGTACT CGGCGCCGCC CATGAACCCG TGTTGGGGAT TGTGAGCCCA AGTGGCGAGG CGGTGGATCT TTGCGACTGC CTGTTATATC CAGCTGATAT GCAAGCCTTG TTGCACCGTT TAACCCGCTT TGTGCAGCAG GCGGGCCTTC CTCCCTATCG GGTTGATAAA GCCAAGGGCG AGCTTAAGTT TATTCTGCTG ACCCGCAGCC AAGTACGCGG CGAATATCTG CTGCGTTTTG TGCTGCGATC ACACAATGGC ATTGAACGTA TCGAACGCGA ATTACCTGCA TTACTGGCCG AATATCCGCA AATTAAAGTG GTGTCAGTCA ATATCCAACC AGTTCATATG GCAATCCTTG AGGGCGATGA AGAGATTTTT TTAACTGAGA ATACTAGGCT TGAAGAACGT TTTAATCATG TGCCTTTGTT CATTCGGCCC AAGAGCTTTT TCCAGACCAA TCCGCAGGTT GCGGCTCAGT TATATCAAAC CGCCCGTGAG TGGGTTGCCG AGTTTTCTCC TCGCTCGTTA TGGGATCTGT TTTGTGGCGT CGGCGGTTTC GGACTACACT GCGCATCCAA AGACATAACA CTCACAGGGA TTGAAATTGA AGCCGAGGCG ATTGCCTGCG CGCAAATGTC AGCGCAAATG ATGGGGCTCG AAAACGTGCA ATTTATGGCG CTCGATTCCA CCGACTTTGC CAAGGGCAAA AGCGCTGCCG ATAAGCCGGA TTTGATCATT GTTAATCCAC CAAGGCGCGG CATTGGCGAG GCTTTATGCC AGTCATTAAG CGAGTTTGCA CCTAAGGCAA TTCTTTATTC CAGCTGTAAT CCCAAAACCT TAGCGAAAGA TCTCGAGCAT ATTCAAGGTT ATCACTTAAC CAAGGTGCAG CTATTTGATT TATTCCCCCA CACGGATCAT TTTGAAGTCT TAGCTATGTT GGTGAAGGAT TAA
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Protein sequence | MSAAIVNAVK QCGYFNQGQC LSCRHIQQPL AQQVAVKTQT LLQLLAPFIP ANSAELFLPP ITGDDSGFRN KAKMVVLGAA HEPVLGIVSP SGEAVDLCDC LLYPADMQAL LHRLTRFVQQ AGLPPYRVDK AKGELKFILL TRSQVRGEYL LRFVLRSHNG IERIERELPA LLAEYPQIKV VSVNIQPVHM AILEGDEEIF LTENTRLEER FNHVPLFIRP KSFFQTNPQV AAQLYQTARE WVAEFSPRSL WDLFCGVGGF GLHCASKDIT LTGIEIEAEA IACAQMSAQM MGLENVQFMA LDSTDFAKGK SAADKPDLII VNPPRRGIGE ALCQSLSEFA PKAILYSSCN PKTLAKDLEH IQGYHLTKVQ LFDLFPHTDH FEVLAMLVKD
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