| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3406 |
|---|
| Symbol | |
|---|
| ID | 7086020 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 4044227 |
|---|
| End bp | 4045708 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 643462292 |
|---|
| Product | diguanylate cyclase with PAS/PAC and GAF sensors |
|---|
| Protein accession | YP_002359313 |
|---|
| Protein GI | 217974562 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATAATG ATGGCTACAC TTCCCTAAGC AATTTTATCG ACCTTCTCTT GGATGCTATT
TGCGTCGTCG ATAAAGCGGG CCGGTTTGAA TTTGTCAGTG CTGGGGCAGA ACGCATTTTT
GGCTATACCC CAGAAGAAAT GATTGGCATG CAGATGCTCG ATCTTGTTAT TCCAGAGGAT
AGAGAGCGCA CACTCGCAAC CGCCAATGAG ATTATGACCG GCCGTTATAA GGTCGATTTC
GAAAACCGTT ATGTGCGTAA AGACGGCGTA ATTGTCGATA TTTTGTGGTC CGCACGCTGG
TCCGATGCTT ACCAACAACG CGTTGCGGTC GCCAGAGATA TCTCTAAGAG TAAAAACGCC
GAACGCAGAC AAGCTGCACT GTATGAGATT TCTGAAGCTG TGCATGTCGC TGAGGACTTG
CTAGCCCTAT ATCGTCGTAT CCATGAAATC ATTGCAAAAT TGCTGCCCGC GGCAAACTTT
GCCATCGCAT TGTACGATCA AGATTTAAAT GAACTCAGTT TCCCTTACAA AGCCGCTGCG
GGTGATAATT CACTGGTCGA TATTGCAAGT TTCAGCCTGT TCACCGAACA AGTGATCCAC
AGTGCAGAGT CTTTACTCCT GTGTCCCGTG ACCTTATCTG AGTATCCCCA AGCCATTCGT
GAAGAGCTGG GTAATGGCAA TTTAAGTTGG TTGGGTGTGC CGCTAAAGCT GCAAAAAGGC
GTTATCGGTG CCTTGATGAT GCATAGCTTG CCCACTTCGG CTTCTTATAC GCACCAAGAC
CGTGAGCTAT TGGAGTTTGT TTCTACGCAA ATTGCCTTTG CGATTGAACG CCGACAAATG
CTTGCGCGAT TAGAGCATAT TGCGCTGTAT GATCAGCTAA CCCTGTTGCC CAATCGTGAG
CTTTTTTACG ACAGGTTTCA AAAGGCGCTA TCCCGAGCCC ATAGGGAATC AAGTTATTTC
TCTTTACTTT ATTTAGACTT AGATAAGTTT AAGTGGGTGA ACGATAACTT TGGTCATAGT
GTGGGCGATT TATTGCTGCA AGTGACAGCA CAACGTATTG TCAGCTGTGT AAGGGGCTCA
GATACCGTAG CGCGTTTTGG GGGCGACGAG TTTGTCATCT TACTCGAGCG CGTTGATTCG
GCACAAAATA CCCTGTTGGC AGCGCAAAAA ATATTACAAG TCCTCAATCA ACCCTTTGAG
CTTACCGATC AGCAAATCCA TATTCTGCCA AGTATCGGTA TTGCCCTGTA TCCGGAGCAC
GGCACGGACG AAAAACAGTT ACTTTCCTGT GCGGATGCGG CCATGTATAA GGCCAAGAAG
AATGGGGGCA ATCGCATTGA AATGGGCTAT CAAGGGCTGA GAAACCTGCA TGCAGATCCT
TTCACAGCGG CTCCTGAGTT AAAGAGCGCT GAGTTAGAAG ACCGTGAATT AAAAGACACT
GAGTTAAATA ACCTTGAAAT CAAGGCGACT AAGATAGTGT GA
|
|---|
| Protein sequence | MNNDGYTSLS NFIDLLLDAI CVVDKAGRFE FVSAGAERIF GYTPEEMIGM QMLDLVIPED
RERTLATANE IMTGRYKVDF ENRYVRKDGV IVDILWSARW SDAYQQRVAV ARDISKSKNA
ERRQAALYEI SEAVHVAEDL LALYRRIHEI IAKLLPAANF AIALYDQDLN ELSFPYKAAA
GDNSLVDIAS FSLFTEQVIH SAESLLLCPV TLSEYPQAIR EELGNGNLSW LGVPLKLQKG
VIGALMMHSL PTSASYTHQD RELLEFVSTQ IAFAIERRQM LARLEHIALY DQLTLLPNRE
LFYDRFQKAL SRAHRESSYF SLLYLDLDKF KWVNDNFGHS VGDLLLQVTA QRIVSCVRGS
DTVARFGGDE FVILLERVDS AQNTLLAAQK ILQVLNQPFE LTDQQIHILP SIGIALYPEH
GTDEKQLLSC ADAAMYKAKK NGGNRIEMGY QGLRNLHADP FTAAPELKSA ELEDRELKDT
ELNNLEIKAT KIV
|
|---|
| |