| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3257 |
|---|
| Symbol | |
|---|
| ID | 7087635 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | + |
|---|
| Start bp | 3864514 |
|---|
| End bp | 3865767 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 643462140 |
|---|
| Product | diguanylate cyclase with GAF sensor |
|---|
| Protein accession | YP_002359164 |
|---|
| Protein GI | 217974413 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0304774 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAATTAA GGGATAATTT CAAACGTAAG ACCATAGATC GCTTAGATTA TCGCTATCAT
CTGCTATTGC TCATCGTGCC GATATGTCTA TTCGTCCTGC TATTTATCTT TAATGCACCC
ACAGAAGGTT GGACTATCCT GCCATTACTG TTTGTTTGCA TCATTTACAT TTTTGCCTAT
AGCCTGATTT ACTATTTGCA TCAAGGTCGT TTAACTCGAC TGTGGGAGCA TTTAGAGCAA
GTCGTCACCA TCAATGATGC CATTTACGAG CTCGCGCACC TCTCAAGCCA TTATAAAAAT
GAGCATGCCT TTCTCGACGC CTTACTCAAC AAAGCCGTAT ACGTGATTAA TGGTGCCGAA
ATGGGCAGCA TCATTAAAGT CAACGAAGCC AATAACAAAC TGCATTTCGA ATCTGTCGTG
GGGCTCGATT TAGCAAAACT CAGACAACTG GATTTTACCT TAGAGCAAAC CTTTGAATAT
CGGCTCACTA AGGGGAGATG CGATCAGGTC GTGGTCATCA ATGATATGAA AAATATCAAT
GCAGCCAGCA CCTTAACGGA AGATGATCAA AGAGTGTTAC TCACAGTGTC GAAGCAGCCG
ATACGCTCAA CACTGTCTAG CCCTATCCGT ATCGATGGCA AGCTCTATGG CATGCTCAAC
CTCGACAGCA GTAGCCTTGG TGCCTTTAGC GATTACGACC GCAACCTTGT CTCTATCCTG
ACCCACGAAG CCAGTAATGC TATTGCGCTC TATCAGAAGT CACAGCAGAT CACTAAACTC
GCGAATTTCG ATCCCCTCAC AGGGCTTTAT AATCGAAAGA ATTTTGAAGA TGAACTGCAC
CACTGGCAGC ACAAACCTCA CCTTGGCAGC TTTTTGATTA TTATTGATAT GGATAATCTT
AAAGCCATTA ATGATGCCTA TGGGCACCAG ACAGGCGATG TTGCCATTAA ACGCACGGCC
ACAGCCATAC TGACCTATTG GCAAAATAAA GGCATTATTT CCCGTTTTGG TGGCGATGAG
TTTGTCGCTT TATGCCATGG GCCGCTAACC CAAATCGAGG AGGACTTAGA TAATATGCGC
AAAACCTTGA ATCAAGGCTC TGAGCTTAGC CTCGCTTTTA GTTTTGGGAT TGCTCCGTTT
GAAACTGATT GGTATCAATC CTTTAAGACT GCAGATCATG CCATGTATGA GCAAAAGCGC
GCGAAGAAGA AAGCCATTAA AGCATTAGAA ACTTTCGCGG TGAAAGCACA ATAA
|
|---|
| Protein sequence | MKLRDNFKRK TIDRLDYRYH LLLLIVPICL FVLLFIFNAP TEGWTILPLL FVCIIYIFAY
SLIYYLHQGR LTRLWEHLEQ VVTINDAIYE LAHLSSHYKN EHAFLDALLN KAVYVINGAE
MGSIIKVNEA NNKLHFESVV GLDLAKLRQL DFTLEQTFEY RLTKGRCDQV VVINDMKNIN
AASTLTEDDQ RVLLTVSKQP IRSTLSSPIR IDGKLYGMLN LDSSSLGAFS DYDRNLVSIL
THEASNAIAL YQKSQQITKL ANFDPLTGLY NRKNFEDELH HWQHKPHLGS FLIIIDMDNL
KAINDAYGHQ TGDVAIKRTA TAILTYWQNK GIISRFGGDE FVALCHGPLT QIEEDLDNMR
KTLNQGSELS LAFSFGIAPF ETDWYQSFKT ADHAMYEQKR AKKKAIKALE TFAVKAQ
|
|---|
| |