| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3237 |
|---|
| Symbol | |
|---|
| ID | 7085850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 3839748 |
|---|
| End bp | 3841307 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 643462120 |
|---|
| Product | integral membrane protein MviN |
|---|
| Protein accession | YP_002359144 |
|---|
| Protein GI | 217974393 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0728] Uncharacterized membrane protein, putative virulence factor |
|---|
| TIGRFAM ID | [TIGR01695] integral membrane protein MviN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000353864 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.701129 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGTAGAA AATTATTAAA ATCTGGTCTG ATTGTTAGTG CTATGACATT GATATCCCGT
GTGTTAGGTC TTGTTCGGGA CGTCGTCGTT GCTAACTTGA TGGGGGCCGG GACAAGTGCC
GATGTGTTTT TCTTCGCCAA TAAAATTCCT AACTTTTTAC GTCGTTTGTT TGCAGAAGGG
GCTTTTGCAC AAGCCTTTGT GCCTGTTTTA ACTGAGTATC AAGAGAAACA TACCGCGGAA
GAAACCCGTG ACCTGTTGAG TAAAGTTGCA GGCACATTAG GTTTGTTGGT GACGATTGTG
ACGCTTGTGG GCGTGGTGGC TTCGCCTGTG TTATCAGCCT TATTTGGCGG TGGTTGGTTT
ATCGCTTGGC TTAACAATGA GCCCGACGGC GCTAAATTTG AACTCGCTAC CGTTGTGCTT
AAAATTACTT TTCCTTATTT GTGGTTTATC ACCTTTACCG CACTGGCTGG CTCGATTTTA
AACACCCGAG GCCGATTTGC GGTTTCGGCG TTTACCCCTG TATTCCTCAA TGTGGCGATT
ATTACCGCGG CCATATTTTA TGCGCCAACA TCGACTCAAC CCGAAATCAC CCTTGCTTGG
GGCGTTTTTT GTGGCGGATT AATCCAGTTC TTATTTCAAA TTCCTTTTTT GTTGCGTGAA
AAAGCACTGG TTAGACCCTC GTGGGGTTGG CATCACCCTG GAGTGGTGAA AATCAGAACC
TTGATGATCC CGGCGCTATT TGGCGTATCG GTTTCACAGA TTAACCTGTT ATTTGATACC
TTTATCGCCA GTTTTTTGAT GACGGGCTCG ATAAGCTGGC TCTACTATGC CGACCGTTTA
TTGGAGTTTC CCCTAGGATT GTTTGGGATC GCGATTGGTA CTGTGATTTT ACCTGCGTTG
TCACGAAACC ATGTCAATGC TGAAGGTGCG GGGTTTGGCT TGACGATGGA TTGGGGGGTT
AAAGCGATTC TGCTGCTAGG TCTTCCTGCC ATGATGGGGT TAATAATCCT CGCAAAACCT
ATGTTGATGG TGTTGTTTAT GCGCGGCGCT TTTTCGATGC ATGATGTTGA AATGGCTTCT
TATAGTTTAA TGGCTTACGG TAGTGGTTTA CTCAGTTTTA TGCTGATTAA AGTACTCGCA
CCAGGTTATT ACTCCCGCCA AGATACCAAA ACCCCTGTGC GTTATGGCAT TATCGCCATG
ATCACCAACA TGGGCTTTAA CTTATTGTTT GCTATTCCTT TTGGATATGT TGGATTAGCG
ATTGCGACTT CAATGTCAGC ATTGCTCAAC GCCACTTTAC TTTATCGAGG ATTGCATTTA
GCCGGCGTTT ATCGCGTTTC TAGGCCGACT ATGGTGTTTT TTGCTAAAGC CGTGGTCTCT
ACCGCCTTGA TGGTGGTAGT CTTGTATTAC TTTTTACCTT CGCAACAAAT TTGGTTAGAT
TGGCATTTGT TCGAGCGTGC AAAAGCCTTG ATAGGCTTGA TTTTAGCGGG GGCAGTCAGT
TACTTGTTGG GACTGCTTTT GCTCGGAATT CGTCCTTGGT CAATTAAACG GGGAGTTTGA
|
|---|
| Protein sequence | MSRKLLKSGL IVSAMTLISR VLGLVRDVVV ANLMGAGTSA DVFFFANKIP NFLRRLFAEG
AFAQAFVPVL TEYQEKHTAE ETRDLLSKVA GTLGLLVTIV TLVGVVASPV LSALFGGGWF
IAWLNNEPDG AKFELATVVL KITFPYLWFI TFTALAGSIL NTRGRFAVSA FTPVFLNVAI
ITAAIFYAPT STQPEITLAW GVFCGGLIQF LFQIPFLLRE KALVRPSWGW HHPGVVKIRT
LMIPALFGVS VSQINLLFDT FIASFLMTGS ISWLYYADRL LEFPLGLFGI AIGTVILPAL
SRNHVNAEGA GFGLTMDWGV KAILLLGLPA MMGLIILAKP MLMVLFMRGA FSMHDVEMAS
YSLMAYGSGL LSFMLIKVLA PGYYSRQDTK TPVRYGIIAM ITNMGFNLLF AIPFGYVGLA
IATSMSALLN ATLLYRGLHL AGVYRVSRPT MVFFAKAVVS TALMVVVLYY FLPSQQIWLD
WHLFERAKAL IGLILAGAVS YLLGLLLLGI RPWSIKRGV
|
|---|
| |