| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3228 |
|---|
| Symbol | |
|---|
| ID | 7085841 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 3828251 |
|---|
| End bp | 3831757 |
|---|
| Gene Length | 3507 bp |
|---|
| Protein Length | 1168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 643462111 |
|---|
| Product | type IV pilin biogenesis protein, putative |
|---|
| Protein accession | YP_002359135 |
|---|
| Protein GI | 217974384 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTATTA AAAAGCTGGC TTGTTCTACA CTACTTGTGC TGACTTTTGT GTCGGCTTAC
TCCTTTGGTG ATGATACTGA ATTGTATGTA AAAGAGTCGA CAACTCGAAC AGGCGCAAGA
CCGAAAGTAC TTGTCATATT TGATAACTCG GGAAGTATGT CGACAGAAGA AATCACCCAG
GTTGTAGACT ATGATCCTAA CTATGATTAC CCTGCAGTTA GTGGTTCAGG ATATAGCGAT
ACCTTGATTT ACTATACTGT TGGCGGTGGG GGATTACCAA CTCCTGATAC CAGTTCGGAC
AAGCGTTATT TTAAAGCAAG TTTAAATGGA TGTAGTCAAA GCAAAGCAGC ATTAGCAGAG
CTTGGACGTT TTACTGGCTA TATTCGAGAG TTTACAGTGA GTGGTACTAC AGGTATTTGG
AAAGAACTGC CTGAAACTAA CGGTACTGCA ATAAGTGTAG TTGATTGTTG GCAGGATATT
TCAAAAACAG ATCCTAACAA TTCATCATCA TACTCTAATG GATTTTCTGC TAATGGCCTA
ACAACTGGGT CTGGTAAAAA AAAGAAAGCC TATCCCTATT TTACTTCTTC ATCTCCAGGG
ACGAGTTGGG CTGATGCTTT AGCCGCTGCA AATAATACTG ATTTTGGCGT TGGTCAACCT
GTTACCTTGT ACACTGATAA TTATCTAAGA TGGTACGGAT TATCTAAAGC AGGGAAATTA
CCAACAGTAA AAGTTTCAAG ACTAGAAATT GCGAAGAAAG CGATTTCTAA TATTATTAGT
TCAACTCCAA CAGTGGATTT TGGACTTGCT GTATTTAACT ATAATTATCC AAATGAAGGT
AACCGAGACG GTGGGCGAAT TGTCTCTGGC ATTACTCAGA TGACGGATAG TACGCGTGCG
AGTTTACTAA CTACTATTGA TAATTTGTTG GCAAAAACAA ATACACCACT ATGTGAGACT
ATGTATGAAG CTTACCGTTA CTTTGCGGGA AAGGGAGTTA AATATGGTCA TGGTGATACT
GATTATGGCT CGTATGTGGG AAATAAACCC CCTTATGATA GTTTAGTGGA GAAGGGGGGT
AGCTACGAAA GTCCATTTAA AGTATGTACG GATATTGCCT ATGTTATTTA TGTCACTGAT
GGCACACCTA CTGTTGATAA AAATGCAAAT AATGATGTTA TTAGTTTAAC GGCTTCAGGA
AGTAAAGAAG GTAATTATTC CTCATTTTCT AAAAATTTAG ATACGGCAAG TTATTTACCC
GCCTTAGCTA GTTATATGTT TAATAATGAT TTAATCAATA AACTGGACAG CTCGAATACT
GAGCAGATGC AAAATGTTCG TACTTATACT ATTGGCTTTA GTAAAGGTGC TGAAGATGCC
GCCCCTTTAC TTGCTGAAAC TGCAAAAAGA GGTGGCGGTT TATATTTTGC GGCTCAGAAC
AGTCTTGAAC TACAGAATGC ACTGAATGAT GCTTTATCGA ATATTTTGAA CATTGATTCA
AGTTTTACCT CCCCCAGTAT CGCCAGCAAT AATTTTGATA GAACTCAAAC ATTTGACGCA
GCTTATTACG CGATGTTTTT ACCTGGCAAA GGTCCTCGTT GGAGTGGTAA TTTAAAGAAA
TTAAAAGTGA CTGCAGATGG AACACTGGTT GATAGCAAAG GTAATGCCGC TATCGCCGAT
AACGGGAATA TTAAAGACGG CGCCTGTACT ATATGGTCAA ACTGTGATGC GCAAAAGGAC
GGCAATAAAG TTGAGGTCGG AGGCGTTGCT GCGCAAATAA GGACACAATC GGTTAGAAAA
ATTGTAAGTG ATTTAGGGGC GGGATCAAGT TTAACGCCAT TAACGCTTGC TAATGCACAA
AGTGCAGCAG GTGGTGATAC AGCGTTAGCT AGTTACATGA GAACTAGTGT AGATGAGCTT
ACAAATACAT TCGATTGGCT CAAAGGGATA GATGTCGATG ACGATAACAA AGATGGTAGT
ACGACTGATA AACGTAATGA TGTTATGGGT GATCCACTTC ACTCTAAGCC GCTAGCTCTT
AATTTTGGTT CATCTACAGC AACTGATATT CGTATTATGT TAGGCACTAA TCAAGGTGTT
TTGCATATGT TTAAAGATGC GGGAGAGTCT GTATCAGAAA CTTGGGGATT TATTCCCTAT
GAATTATTAC CTAATTTAAC AGAACTAAGG AGTAATGATC CTTCAGGTGT GCATACAGTA
TATGGAATAG ACTCATCACC AGTCGCTTAC ACTGAGACGG ATGCTACAGG TAAAGTAATT
AAAGCATGGG TTTATGTCGG CATGCGTCGA GGTGGTTCGT CTTATTATGC CCTTAATGTG
ACAAATCCTG ACAGTCCTAC TTTAATGTGG TCGATTAATC CTTCAACCGA AGGTTTTTCA
GATCTCGGAC AAACATGGTC TGAACCAATA GTGACAAAAA TCGTCGGTTA TGAAAAGCCT
GTACTCATTT TTGGTGGTGG CTATGATACA AGCTTTGATG CCACTCCTTC TTCTTCGCCG
GCTGGTCGTG CAGTGTATAT TGTTGATGCA GAGAAGGGGA CTTTGATTCA TTCTTTTGGC
GGTTCGACCT CGGGTGCAAC AGTACTTTCT GGCATTCAGG ATAGCATTCC AAACTCAGTC
GCGGTACTTG ATAGTAATAA TGATGGTTAC ACAGATCGAA TTTATGCAAC TGATGTTGGT
GGTAATGTTT GGCGTATGGA TTTGCCCAGT GCTAGCCAGA GTAGTTGGAC CGCATTTAAA
TTTGCAGCGC TAGGAGGAAG CAATAACGAT AATAGACGCT TTTTTGCCGA GCCCGTGGTT
GCACAAACGA TGTTTACTAA CATTGCTGAA GTTAAAGTGA CGACTGGTAC TGGAACGACA
ACTACCAAAA CCTACCAAAA TGTTCCCTAT GATGCCGTCG TGATAGGCAG TGGTGCCAGA
CCTCATCCTT CTAGTACTGC AGTGAATGAC ATGTTTTTCA CGTTGCAGGA TAGGAATGTG
GTGACTAAGA GTTTTACTGG CAGTGATATT CCAAGCGTGA TTACCATCAA TGATCTCTAT
GACGTGTCTT CTAGCGCACC AGTTTCGGAG ACTGATAATA TTAGCTTTGG TAAAAAACTA
GGCTGGTTTT ATGATTTTTC TGGCTTAGGA GAGAAGAGCT TAACTGCCGC CTTAATTGTG
CAAGGGAAGG TATATTTCAC CTCTTACTCT CCACCTGCAG ATTCTGTTGC CGAAAACGTC
TGTGTAGTTT CTGGGTCTGG GAAGCTCTAT GTATTTGATC TTCATAAGGG AACAAGAACC
TTCTCCCAGT TGTATTTTGA GCTTGGTGAG CGAGTACCCG ATACGCCTCA GATTGTTATC
CCTGCGCCTG AAACAGGGAA GGATCCTTAT ATTTATATTA TTGGAGTGGG TAAGGGTGAG
AAAAACAAAG ATGGTGAATA TAGTGGAACC ATAAATGTAG CCTCTGGTTT AGGTGTGAAT
AAAATTTATT ATCATATAAA TGAATGA
|
|---|
| Protein sequence | MIIKKLACST LLVLTFVSAY SFGDDTELYV KESTTRTGAR PKVLVIFDNS GSMSTEEITQ
VVDYDPNYDY PAVSGSGYSD TLIYYTVGGG GLPTPDTSSD KRYFKASLNG CSQSKAALAE
LGRFTGYIRE FTVSGTTGIW KELPETNGTA ISVVDCWQDI SKTDPNNSSS YSNGFSANGL
TTGSGKKKKA YPYFTSSSPG TSWADALAAA NNTDFGVGQP VTLYTDNYLR WYGLSKAGKL
PTVKVSRLEI AKKAISNIIS STPTVDFGLA VFNYNYPNEG NRDGGRIVSG ITQMTDSTRA
SLLTTIDNLL AKTNTPLCET MYEAYRYFAG KGVKYGHGDT DYGSYVGNKP PYDSLVEKGG
SYESPFKVCT DIAYVIYVTD GTPTVDKNAN NDVISLTASG SKEGNYSSFS KNLDTASYLP
ALASYMFNND LINKLDSSNT EQMQNVRTYT IGFSKGAEDA APLLAETAKR GGGLYFAAQN
SLELQNALND ALSNILNIDS SFTSPSIASN NFDRTQTFDA AYYAMFLPGK GPRWSGNLKK
LKVTADGTLV DSKGNAAIAD NGNIKDGACT IWSNCDAQKD GNKVEVGGVA AQIRTQSVRK
IVSDLGAGSS LTPLTLANAQ SAAGGDTALA SYMRTSVDEL TNTFDWLKGI DVDDDNKDGS
TTDKRNDVMG DPLHSKPLAL NFGSSTATDI RIMLGTNQGV LHMFKDAGES VSETWGFIPY
ELLPNLTELR SNDPSGVHTV YGIDSSPVAY TETDATGKVI KAWVYVGMRR GGSSYYALNV
TNPDSPTLMW SINPSTEGFS DLGQTWSEPI VTKIVGYEKP VLIFGGGYDT SFDATPSSSP
AGRAVYIVDA EKGTLIHSFG GSTSGATVLS GIQDSIPNSV AVLDSNNDGY TDRIYATDVG
GNVWRMDLPS ASQSSWTAFK FAALGGSNND NRRFFAEPVV AQTMFTNIAE VKVTTGTGTT
TTKTYQNVPY DAVVIGSGAR PHPSSTAVND MFFTLQDRNV VTKSFTGSDI PSVITINDLY
DVSSSAPVSE TDNISFGKKL GWFYDFSGLG EKSLTAALIV QGKVYFTSYS PPADSVAENV
CVVSGSGKLY VFDLHKGTRT FSQLYFELGE RVPDTPQIVI PAPETGKDPY IYIIGVGKGE
KNKDGEYSGT INVASGLGVN KIYYHINE
|
|---|
| |