| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3112 |
|---|
| Symbol | rnc |
|---|
| ID | 7087890 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 3688852 |
|---|
| End bp | 3689532 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 643461996 |
|---|
| Product | ribonuclease III |
|---|
| Protein accession | YP_002359020 |
|---|
| Protein GI | 217974269 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0571] dsRNA-specific ribonuclease |
|---|
| TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000174676 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.00647326 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAACCGA TTAAAAATTT GCCACGTTTG TGTCGTACTT TAAGTTATGA GTTCAAGAAT
ATTGAGCTGT TGACTCAAGC GCTGACCCAC AGAAGTGCGG CAAATAAACA CAATGAACGC
TTAGAGTTTT TAGGTGATTC AATTTTATCT ATTGTGATTT CTGATGCCTT ATATCATCAG
TTTCCGAAGG CGACCGAAGG CGATTTAAGC CGGATGCGCG CCACCTTAGT GCGCGGTGAT
ACCTTAACGA TCATCGCCCA AGAATTTAAG CTCGGCGATT ATTTGTATCT CGGTCCTGGC
GAATTAAAAA GTGGTGGATT TAGACGCGAG TCGATTCTTG CCGATGCGGT TGAAGCCATT
ATTGGCGCCG TTTACCTTGA TTCCGATCTC GAAGTTTGCC GTGCATTACT GCTGAAATGG
TATGCCGAGC GTTTGGCCGA AATTCAACCC GGGATCAGCC AGAAAGACGC AAAAACATTA
CTGCAAGAAC ATTTACAAGG GTTTAAAAAG CCGCTGCCTG ATTACCAAGT AATCAACATA
GAAGGCGATG CCCACGATCA GACATTTACC GTTGAATGTC GTATTGAAGA CTTGAGCCAA
AGCGTCATTG GTGTGGCGAG TTCACGCCGT AAAGCCGAGC AAATCGCGGC CGCTCAAGTA
TTGGAGTTAC TAAAGAAATG A
|
|---|
| Protein sequence | MEPIKNLPRL CRTLSYEFKN IELLTQALTH RSAANKHNER LEFLGDSILS IVISDALYHQ
FPKATEGDLS RMRATLVRGD TLTIIAQEFK LGDYLYLGPG ELKSGGFRRE SILADAVEAI
IGAVYLDSDL EVCRALLLKW YAERLAEIQP GISQKDAKTL LQEHLQGFKK PLPDYQVINI
EGDAHDQTFT VECRIEDLSQ SVIGVASSRR KAEQIAAAQV LELLKK
|
|---|
| |