| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3101 |
|---|
| Symbol | trmD |
|---|
| ID | 7087879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 3679469 |
|---|
| End bp | 3680215 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 643461985 |
|---|
| Product | tRNA (guanine-N(1)-)-methyltransferase |
|---|
| Protein accession | YP_002359009 |
|---|
| Protein GI | 217974258 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000021504 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.113606 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGTTAG GGGTAATAAC CCTGTTCCCA GAGATGTTCC GTGCCGTGAC AGACTTTGGA
GTTACGGGTC GAGCCGTGAA AAACGGCCTG CTCGAGTTGC ACACGTGGAA TCCCCGTGAT
TTCACCCATG ATAGACATAA TACGGTAGAT GACAGGCCTT ACGGCGGTGG TCCCGGAATG
TTGATGATGG TGCAACCCTT GCGCGATGCC ATCCATGCAG CGAAAGCCGC AGCGGGTGAA
GGTGCGAAGG TGATTTACTT GTCACCTCAA GGACGCAAGC TGGATCAGCA AGGCGTCACT
GAGTTGGCTC AATCATCACG TTTGATTTTG GTCTGTGGTC GATACGAAGG TATTGATGAA
CGCATCATTC AAACGGAAGT GGATGAAGAG TGGTCGATAG GGGATTACGT GCTTTCGGGC
GGCGAATTAC CGGCGATGAC TCTGATAGAT TCAGTATCGA GATTGGTTCC TGGCGTGCTA
GGAAAACAAG CTTCGGCGGA GCAAGATTCT TTCTCCGACG GTTTACTGGA TTGTCCACAT
TACACTCGCC CTGAAAGCCT TGATGGTGTT GACGTACCGG CAGTGCTGCT AAGTGGCAAC
CACGAACAAA TTAGACTCTG GCGTTTACAG CAAAGCCTTG GTAGGACTTT ACTGAGACGG
CCAGAATTAT TGCAAAATCT AGCTCTGACT GACGAACAAA CGACTCTATT AGCGCAGTTC
GTTGAAGCAA TGAACAAGCA TGCTTAG
|
|---|
| Protein sequence | MWLGVITLFP EMFRAVTDFG VTGRAVKNGL LELHTWNPRD FTHDRHNTVD DRPYGGGPGM
LMMVQPLRDA IHAAKAAAGE GAKVIYLSPQ GRKLDQQGVT ELAQSSRLIL VCGRYEGIDE
RIIQTEVDEE WSIGDYVLSG GELPAMTLID SVSRLVPGVL GKQASAEQDS FSDGLLDCPH
YTRPESLDGV DVPAVLLSGN HEQIRLWRLQ QSLGRTLLRR PELLQNLALT DEQTTLLAQF
VEAMNKHA
|
|---|
| |