| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3059 |
|---|
| Symbol | |
|---|
| ID | 7088969 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 3622598 |
|---|
| End bp | 3625363 |
|---|
| Gene Length | 2766 bp |
|---|
| Protein Length | 921 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 643461943 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_002358967 |
|---|
| Protein GI | 217974216 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.227976 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0140856 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGATAG ATTTACCTAT TTCGCAGCAA GAGCTGGATA ACTGGTTGAG GGACGTAAAC
TTAGTCGCCG AGATATCAAA CAGTAAAGCA ATATTAATAG CATGGAATGC TGCGGGTGAA
CTTAGCAGTA TGTTAAGTTC AGATTCTGCG GCTGAAAGCG AAATACAGGC AATACTCTGT
CAGTTAAGTG GCAATCATTC GGCGAAACCC CTGCCTATCG CAACATTATC AGCTACTACG
TCATCAACCG CTACACAGTC CAAAGCTGCT CCATCAACAG CCACTACATC AAACGCGACG
ACATCAGAAC TCACTTCCAA TCCGTCCGAT ACGTTTGAAA CTTCCGTTGA TGCCCAATTA
GCCCAAGAAC AGTTGGTCAG CCCAACTGAG CCGATTTCGG TATTGCCGCG ATTAGGTCAG
CATCAAATCA CCTCATCATT ATCTGTGTCA AAGTTAACTG AGCTGGTCAG TCAGTCCCAA
TTGATCATAG ATACTCGGCA GCACTCAGAT TGGCGCACTT GTAGCGCAAT CGGCAGCGTG
ATTTGTTTAT CCCTCGCTTG GCCATCAGGG GCAAATTTTG GCTTTTTATG TTTTTATCAC
AACGAGGCGC TCGGCGTAGA TTCGAAAACG CTGCAGCTTG CAAAGCTTAT CAGCGATAGC
ATTCAACGCC AGTTAGGCGA GATATTGAGC CAACACAGTG CGGCTCAAAC ATTAAGCCGA
GGTGTGCCAA GGTGTGTCGA TACGGTCGAT TTACAAACCT TTATCGATAG TTTTGAAGAA
CATATTTGGA TGAAAAATGC CGCTGGCATT TACACACTCT GTAATCGCAG CGTCGAGAAA
GCATGGGAAA TGCCCCGAAG TGAGATTGTC GGTAAATCCG ATGTCGAACT CTTTGGTGCT
GAAATTGCGA ATATTTTTCT AGAGGGTGAT AGGCTCGCTA TCGAGTCTGG TATGCCAATT
ATTGTCGCTG AGTGTTTAGA TGGCAATGAA ACTAAAAATC ATCTTTGGTT AGAAACGCTC
AAACTCCCAA CCTTAAATCC CCAAGGTGAG TTTGTGGGCG TTATCGGGAT GACTCGCAAT
ATTTCTAAGC ATAAAGCGGT TGAAGAACAA CTGACACTGG CGACCAATGT GTTTAAAAAC
TCGGTCGAAG GCGTGGTTGT GACCGACAGA CACGGCAATA TCACCGACGT AAATGGCGCA
TTTTTTGAGA TCACAGGTTA TGTGAGGGAA GAGCTGCTCG GTCAGAATCC ACGGATTTTT
AGCTCGGGTC GGCATGATAA AGCATTCTTC GATAAGCTGT GGAATGCCCT GTTGGCTAAC
GGTAAGTGGA ATGGTGAAAT CTGGAATCGG CGTAAAAACG GTACTATTTT CCCGCAAAAT
ATCACCATAA GTACGATTTA TGATGAAGTC GGTGATGTGC GTTATTTTGT CGCTGTGTTT
GCCGATATTT CTGCCCAAAA AGAGAATGAA GCGCAACTCA CGCACTTAGC GTATTTCGAC
CCGCTAACGC ATTTGCCTAA TCGCATGAAG TTTATGATGC AGCTCAAACA GGAAGTGCGG
CAAGCTAAGC GGCTGAATTT GCAGTTAGCG ACTGTGATGA TAGATGTCGA TTTGTTTAAG
CATATCAACG ACAGTTTTGG CCATAGCATA GGTGATGAAA TGCTGGTTGA GCTTGCCAAG
CGTTTACGCA GCCAAGTCGG CGATCAGGAT GTGTTATCGC GGATTGGTGG CGATGAGTTT
GTGGCGTTAA TTTCGGGGAT TGATAATAGC GAAGATGCCA CGGTTGCCAT TAATCAATTG
CGCCAAGTGT TTGAACAACC TTTTATTGTG AGCACAGGCG ACCACTTGCG TTTGACCGCG
AGCATGGGCG TGTCTTTGTA TCCAAGTGAT GGAGCCGATG CGGACACTTT ACTGCGTAAC
GCAGATGCGG CCATGTATCG CGCCAAAAAT GATGGCCGCA ATAATTATGC TTTTTATACT
GAGTCCTTAA CGCAACAGTC TTTTGAACAT CTTAAGCTGC AAAGTGCCCT CTATGGCGCG
ATTGAGCAAA ATGCCTTGTA CTTGATGTAC CAGCCAAAAC TCGACTTAGT GACTCGAAAA
ACAGTGGGGT TTGAAGCGCT GCTGCGTTGG CACGATCCTC AACTTGGTTT AATTTCGCCC
GCGATATTTA TACCCGTGGC AGAAAAAATT GGTCTTATCC ATGAGATCGG TTTATGGGTG
TTAGAAACCG CCTGTCGTCA GGGCATGCGT TGGCTTAGTG AAGGTAAACA CTTTGGCCGC
ATTGCAGTGA ACGTGGCTGG ACAGCAGTTA CAGCGTAGCT CCTTTGTGGA TGATGTAAAA
CGTGTGTTAG CTGAAACGGG CTTGCCCGCC AAACACTTAG AGCTTGAAGT GACCGAAAGT
GTGATGATGC AAAATCCCGA TCTTGCTATC CGTGACTTAA AGTTACTTGG CGATCTGGGT
ATCGAATTAT CGGTCGATGA CTTTGGCACC GGTTATTCAT CGCTGAATTA TTTGAAAAAA
CTACCCATTC ATAAGCTGAA AATTGATCAA TCCTTCGTGC GGGATATTCC CTTCGACACT
AACAATACTG CGATTGCTAA AGCTGTGATT GCGCTTGGAC ATGCGTTGAA GCTCGACATT
ATCGCCGAAG GAGTGGAAAC CAAAGAACAA GCCGATTTTC TGCAACAAAA TCAGTGCGAT
CAAGCCCAAG GTTATCTCTT TAGTCGTCCG CAACTACCAG AAGATCTCGA CGCATTTCTA
TCGTGA
|
|---|
| Protein sequence | MMIDLPISQQ ELDNWLRDVN LVAEISNSKA ILIAWNAAGE LSSMLSSDSA AESEIQAILC
QLSGNHSAKP LPIATLSATT SSTATQSKAA PSTATTSNAT TSELTSNPSD TFETSVDAQL
AQEQLVSPTE PISVLPRLGQ HQITSSLSVS KLTELVSQSQ LIIDTRQHSD WRTCSAIGSV
ICLSLAWPSG ANFGFLCFYH NEALGVDSKT LQLAKLISDS IQRQLGEILS QHSAAQTLSR
GVPRCVDTVD LQTFIDSFEE HIWMKNAAGI YTLCNRSVEK AWEMPRSEIV GKSDVELFGA
EIANIFLEGD RLAIESGMPI IVAECLDGNE TKNHLWLETL KLPTLNPQGE FVGVIGMTRN
ISKHKAVEEQ LTLATNVFKN SVEGVVVTDR HGNITDVNGA FFEITGYVRE ELLGQNPRIF
SSGRHDKAFF DKLWNALLAN GKWNGEIWNR RKNGTIFPQN ITISTIYDEV GDVRYFVAVF
ADISAQKENE AQLTHLAYFD PLTHLPNRMK FMMQLKQEVR QAKRLNLQLA TVMIDVDLFK
HINDSFGHSI GDEMLVELAK RLRSQVGDQD VLSRIGGDEF VALISGIDNS EDATVAINQL
RQVFEQPFIV STGDHLRLTA SMGVSLYPSD GADADTLLRN ADAAMYRAKN DGRNNYAFYT
ESLTQQSFEH LKLQSALYGA IEQNALYLMY QPKLDLVTRK TVGFEALLRW HDPQLGLISP
AIFIPVAEKI GLIHEIGLWV LETACRQGMR WLSEGKHFGR IAVNVAGQQL QRSSFVDDVK
RVLAETGLPA KHLELEVTES VMMQNPDLAI RDLKLLGDLG IELSVDDFGT GYSSLNYLKK
LPIHKLKIDQ SFVRDIPFDT NNTAIAKAVI ALGHALKLDI IAEGVETKEQ ADFLQQNQCD
QAQGYLFSRP QLPEDLDAFL S
|
|---|
| |