| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3016 |
|---|
| Symbol | |
|---|
| ID | 7088925 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 3564815 |
|---|
| End bp | 3566170 |
|---|
| Gene Length | 1356 bp |
|---|
| Protein Length | 451 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 643461900 |
|---|
| Product | multi antimicrobial extrusion protein MatE |
|---|
| Protein accession | YP_002358924 |
|---|
| Protein GI | 217974173 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.160373 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.416485 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCAA TAACATCTAA TCATGCTCCT GCGGATATGA GCCTGCTCGA GGAGCCGATT
GCGAAGCTTT TTTGGCGCTA TACCATACCC ACCATCGCCT CTATGTTGGT GACGGGCGTC
TATGTGACGA TTGATGGCAT CTTCGTTGGC CACTATTTAG GTGAAACTGG GCTGGCGGGG
ATGATGTTAG CCTATCCAGT CGGCGCTATT TTGTATGCGA TTGGCGCTAT GATCGGCATG
GGCAGCGCGG CATTAGTGTC GATCAACCTT GGTCAAGGCA ATGTGGCTAA GGCCCGTAAA
TTGCTCGGTA ATGCCTTTAG TTTGTGTTTA TTGGCGGGAG CCATTTTTGC CCTCATTGGT
GGGATATTCT CGCGGGATAT TTTGATCGCC CTCGGGGCGC AGGGGGACAT TCTCGAAAAC
GCCAACGAAT ACCTATTCTG GTATTTTGCC CTGTGTCATT TCCCCATTAT TTCAATGACC
TTCACCACAC TGCTGCGTAA TGATGGTCGG CCATCTATGG TGACTTGGGT GCTGATCTTG
GGCGGCGTAT TAAACACTTT CTTAGATTGG CTGTTTATTG TGGTTTTCCC CTTTGGTTTA
GCGGGCGCTG CGATTGCGAC TATGATGTCG CAGGCGGTGA CTGGGCTTTT GTGTTTGCAG
CACTTTTTCA GTCCTCGGAC TCAGTTAAGG ATCGACCTTG AGCAGATGAA GCTTAAGCTC
GACAATTGCT TGAACATAGC CCGTGTGGGT TTACCCAGTT TTTTGATGAA CCTTTATTTA
TCGATAGTGT TAACCCTACA CAACACGGCA TTTTTGTGGG TGGGCGGCCC CTTACACGTG
GCAGCCTATG GCGTGGTGAG TTACACAGAA GCGTTTTTCT ATTTGATTTT CGAAGGTATT
GCCCTCGGCA CGCAGCCAAT TTATAGCTTT AATGCGGGCG CTGGGCGTTT CGATAGGGTT
AAGCAAGCAC GTAATATTGC CTTTGGCATG ACGCTGCTCA CCGCAGCCTT GGGCTTAGCG
CTGATTTATT CTCGCCCTGA ATGGCTAGTG TATTTGTTTG CCGGCGATAA TCAGAACCTA
ACGCCCGTGG CGATTGAAGG TATGCGCTGG TATTTCTGGG GCTTACCGAT GGAAGGTTTA
ATCTTAGTCG GTGCGAGTTT CTTCCAAGCG ATTAATTGCT CGAAACAAGC CTCTATGCTG
ACCGGCGCGA AACTTATCCT GATCGCTGCG ATTATCTACT GCTTCGCTTG GATGTTCGGT
GTGATTGGTG TGTGGGTATC GCTCGCAACC TGTAGCACTA TTCTGACGAT ATGGATGTTC
TACGCCATGA AGCGAGTCGA GGCGCGGCTG CAATAA
|
|---|
| Protein sequence | MTAITSNHAP ADMSLLEEPI AKLFWRYTIP TIASMLVTGV YVTIDGIFVG HYLGETGLAG
MMLAYPVGAI LYAIGAMIGM GSAALVSINL GQGNVAKARK LLGNAFSLCL LAGAIFALIG
GIFSRDILIA LGAQGDILEN ANEYLFWYFA LCHFPIISMT FTTLLRNDGR PSMVTWVLIL
GGVLNTFLDW LFIVVFPFGL AGAAIATMMS QAVTGLLCLQ HFFSPRTQLR IDLEQMKLKL
DNCLNIARVG LPSFLMNLYL SIVLTLHNTA FLWVGGPLHV AAYGVVSYTE AFFYLIFEGI
ALGTQPIYSF NAGAGRFDRV KQARNIAFGM TLLTAALGLA LIYSRPEWLV YLFAGDNQNL
TPVAIEGMRW YFWGLPMEGL ILVGASFFQA INCSKQASML TGAKLILIAA IIYCFAWMFG
VIGVWVSLAT CSTILTIWMF YAMKRVEARL Q
|
|---|
| |