| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3003 |
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| Symbol | |
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| ID | 7089071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | + |
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| Start bp | 3545052 |
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| End bp | 3546920 |
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| Gene Length | 1869 bp |
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| Protein Length | 622 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 643461888 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_002358912 |
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| Protein GI | 217974161 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0997458 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000000135354 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAGTTTGG ACATTTCTCA GTTTCCCGTG TTGGCGCAGG CCAACACCCC TAATGAACTC
CGCCAGCTTC CTCAGGCACT TTTACCACAA GTAGCCGACG AACTGCGCGA GTTCCTTCTT
AAGTCTGTTG GCATATCCAG CGGACATTTT GCCTCTGGGC TCGGCACAGT GGAACTCACT
GTTGCGCTGC ACTATGTCTA CAACACCCCT TTTGATCGGC TGATTTGGGA TGTGGGCCAT
CAGGCTTATC CCCATAAAAT TCTCACGGGT CGTCGTGACA AGATGCACAC CATTAGACAA
AAAGATGGCT TGCATCCTTT CCCATGGCGT GAAGAAAGTG AATACGACAC TTTCAGCGTT
GGGCATTCAG GTACGTCTAT CAGCGCAGCA CTGGCGATGG CGATTGCCGC TGAAAAAGAA
CAAGCGGGTC GTAAAGTCGT TGCCGTGATC GGCGATGGCG CTATGACAGG CGGCATGGTG
TTTGAAGCCA TGAACCACGC TGGCGACTTG CACAATGACA TGCTCGTGGT GTTGAACGAC
AACGAAATGT CGATCTCTGA AAATGTCGGC GCCCTCAATA ACCATTTAGC ACAACTGATG
TCAGGCCGTT TCTACACTAC GCTGCGCGAA GGCGGCAAGA AAGTGTTGAA AGGCATGCCC
GTCATCAAAG AAATGGCCAA ACGCACTGAG GAACACCTCA AAGGCATGGT CGTTCCTGGC
ACCCTATTTG AAGAGTTAGG TTTCAACTAT ATCGGTCCTA TAGACGGCCA CGATGTTGAT
GCTCTGGTCG AGACCATGCG CAATATGCGC AATCTTAAAG GTCCACAGGT GCTGCACATC
ATGACGAAGA AAGGTCGTGG TTATGAACCT GCTGAAAAAG ATCCTATCGG TTGGCATGCG
GTGCCTAAGT TTGACCCGTC GCTGTTTAAA AAGCCGGCCA CCAAACCCGG TTTGCCGACC
TTTTCTCAAG TCTTTGGTAA ATGGCTATGC GACATCGCCG AGCAAGATGA GAAAGTATTA
GCGATTACGC CTGCGATGCG CGAAGGCTCG GGCATGGTAG AGTTTTCCCA GCGTTTCCCG
AAACAATATT TCGATGCGGC GATTGCCGAG CAGCATGCTG TCACCCTATC AGCAGGTTTT
GCCTGTGAAG GCTTTAAGCC TGTGGTGGCG ATTTACTCGA CCTTCCTGCA ACGCGCCTAC
GATCAGCTAA TTCATGATGT GGCGCTGCAA CAATTACCGG TATTGTTTGC TATTGACCGT
GGCGGTATTG TCGGTGCCGA TGGTCCAACT CACCAAGGTG CATTCGATTT AAGCTTTATG
CGTTGCATCC CCAACATGGT GATCATGGCG CCGTCGGACG AAAATGAATG TCGTCAAATG
CTCTACACTG GCTATTGCTA TGATGCAGGC CCAAGTGCAG TGCGTTATCC AAGGGGCTGT
GCCACGGGAG CGACGCAAGT CGAAGCGATG ACGGCATTAC CGATTGGTAA AGGCGTGATC
AAACGTGTGG GCAAGCGCAT TGCCATACTC AACTTTGGCA CCTTGTTAGC CTCAGCATTA
ACCGCAGCCG AAAGCTTAGA TGCAACGGTT GTCGATATGC GCTTTGTGAA ACCACTTGAT
GTTGATTTGG TCAAAGAGAT GGCGCAAACC CACGAAGTGC TAGTCACAGT GGAAGAAAAC
GCCATTATGG GCGGCGCTGG TGCTGGCGTG CTTGAGCAGC TTCAAAAGCT GCGAATGCCT
AAAGCCGTGC TTCAAATTGG TTTGCCAGAT GAATTCATCA AACATGGCTC GCCAGAGGAA
GTCACCCATG ATTTGCAACT GGATGCCGAA GGTATACTGG CGCAAATCAA TGCTTATCTA
GCACAATAA
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| Protein sequence | MSLDISQFPV LAQANTPNEL RQLPQALLPQ VADELREFLL KSVGISSGHF ASGLGTVELT
VALHYVYNTP FDRLIWDVGH QAYPHKILTG RRDKMHTIRQ KDGLHPFPWR EESEYDTFSV
GHSGTSISAA LAMAIAAEKE QAGRKVVAVI GDGAMTGGMV FEAMNHAGDL HNDMLVVLND
NEMSISENVG ALNNHLAQLM SGRFYTTLRE GGKKVLKGMP VIKEMAKRTE EHLKGMVVPG
TLFEELGFNY IGPIDGHDVD ALVETMRNMR NLKGPQVLHI MTKKGRGYEP AEKDPIGWHA
VPKFDPSLFK KPATKPGLPT FSQVFGKWLC DIAEQDEKVL AITPAMREGS GMVEFSQRFP
KQYFDAAIAE QHAVTLSAGF ACEGFKPVVA IYSTFLQRAY DQLIHDVALQ QLPVLFAIDR
GGIVGADGPT HQGAFDLSFM RCIPNMVIMA PSDENECRQM LYTGYCYDAG PSAVRYPRGC
ATGATQVEAM TALPIGKGVI KRVGKRIAIL NFGTLLASAL TAAESLDATV VDMRFVKPLD
VDLVKEMAQT HEVLVTVEEN AIMGGAGAGV LEQLQKLRMP KAVLQIGLPD EFIKHGSPEE
VTHDLQLDAE GILAQINAYL AQ
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