Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal223_2656 |
Symbol | |
ID | 7089941 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS223 |
Kingdom | Bacteria |
Replicon accession | NC_011663 |
Strand | - |
Start bp | 3120149 |
End bp | 3121108 |
Gene Length | 960 bp |
Protein Length | 319 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 643461545 |
Product | pseudouridine synthase, RluA family |
Protein accession | YP_002358569 |
Protein GI | 217973818 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0425559 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.000122586 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAATATAG AATCCACCCC ACAACAGGTT CAGTTGATCA CGATTGATGA AGATCACTTC GAACAGCGTA TCGATAACTA CTTAATGACC AAGCTGAAGG GCGTGCCGAA AAGCATGATC TATCGCATTG TCCGCAAGGG CGAGGTTCGA GTAAATAAGA AACGCATCAA ACCCGAGTAC AAGTTGCAGA TTGGCGACAT AGTGCGTATT CCGCCTGTCC GAGTGGCAGA GCCAGATAAC CGTACTGCAC CATCGCCTAA CTTAAGTAAA GTCTCGCAAC TCGAAGACCG TATTTTGCAC GAAGACAATC ATTTGATCGT GCTGAATAAA CCTGCTGGCA TTGCTGTGCA TGGTGGTAGT GGTGTTGATT ACGGCGTGAT TGAAGCCCTG CGTTCACTGC GTCCTCAACA AAAGTTTTTA GAGCTAGTAC ATCGTCTCGA TAAAGATACT TCGGGTGTGT TATTGGTGGC GAAAAAGCGT AGCGCGCTTA AACATCTGCA TGATCAGCTC AGATATAAAA AGATGCAGAA AGACTATTTG GCCTTAGTTA AAGGTGAATG GTCTGCTCAA GATAAAGCCG TTAAACAGCC TTTATTAAAA ATCACCCTAA AATCCGGTGA GCGCATAGTG CGTGTTAATG CGGAAGGTAA GCCTTCTGAA ACGCGCTTTA AAATTATGCA GCGTTACCAA GGTTGTACTC TCGTGAAGGC AAGCCCTGTC ACTGGGCGAA CTCACCAAAT TCGGGTGCAT TGCCAATTTG CGGGTCATCC TATCGCATGT GATGATAAAT ACAGCGAGCA AGGTTTTGAC GACAGCATGC GTTCATTAGG CTTAGCTCGA CTCTTTTTAC ATGCGGCTGA GTTGATGTTC ATTCATCCTG AAAATGATGA AGTGATGCGG GTCTCTGCGC CCTTAGATGA AAACTTGTCG CAATTATTAG ATAAGTTAAA GCGTGTGTAA
|
Protein sequence | MNIESTPQQV QLITIDEDHF EQRIDNYLMT KLKGVPKSMI YRIVRKGEVR VNKKRIKPEY KLQIGDIVRI PPVRVAEPDN RTAPSPNLSK VSQLEDRILH EDNHLIVLNK PAGIAVHGGS GVDYGVIEAL RSLRPQQKFL ELVHRLDKDT SGVLLVAKKR SALKHLHDQL RYKKMQKDYL ALVKGEWSAQ DKAVKQPLLK ITLKSGERIV RVNAEGKPSE TRFKIMQRYQ GCTLVKASPV TGRTHQIRVH CQFAGHPIAC DDKYSEQGFD DSMRSLGLAR LFLHAAELMF IHPENDEVMR VSAPLDENLS QLLDKLKRV
|
| |