Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal223_2538 |
Symbol | tolB |
ID | 7086104 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS223 |
Kingdom | Bacteria |
Replicon accession | NC_011663 |
Strand | - |
Start bp | 3022381 |
End bp | 3023709 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 643461431 |
Product | translocation protein TolB |
Protein accession | YP_002358455 |
Protein GI | 217973704 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000186682 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0000162747 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGAATAT TGGCAAAATG GTTAGCATTG GCAGTTCTGC TGTGCACCAC CCCCGCAAAA GCGGCATTGG ATATTGTGAT CACAGAAGGT GTTGACGCTG CGCGTCCCAT CGCTGTGATG CCTTTTGTTT GGCAAGGTCC TGGCGCCGCA CCGCAAGCGA TTGCGGATGT AGTGATGTCG GACTTAGTGC GTAGCGGTAC GTTTAAACCT TTAGACGAAC TTGGACTGCC TCAGCGTAAT ATTGGCACTG CAGCACAGTT TCAAGCTAAT TCTTGGTCAA GTGTTGGCGC CGAAGCGTTA GTGCTAGGTA CTGTTAAACC TTATGGTACT GATCAATATC TGGTGAGCTT TGATTTAATC GATTTAGTCA AAGCCCAAAA CCAAGCGTTG AAAGGCCCAG TTAGTGCAAC AGAATTTTTG ATGGACAGCC GTCAAACTGT GATTTCAGCG GCGCAATTTC GCCAATATGG ACACAGGATC AGCGATATCG TCTATGAAAA GTTAACCGGT ATTCGCGGCG CATTCTTAAC GCGGATCTCC TATGTTGTGG TCAATCATAC TCAAAAAGCC CCTTATCAAT TGATGGTTGC TGATTATGAT GGCGTCAATG AACAAATGTT ACTGCGCTCG CCAGAGCCGT TGATGTCACC GACTTGGTCA CCCGATGGTC GTCGTTTAGC GTATGTTAGC TTTGAAAACA AAAAAGCTGA GATCTTCGTG CAAGACCTTT ATACCCAAGT GCGCACTAAA GTGAGCTCTT TCCCTGGTAT TAACGGTGCG CCGGCGTTCT CACCCGATGG AAAATCTTTG GCGATCACTT TATCTAAAGA CGGTCAGCCT GAAATTTACA TCATAGATAT TGCGACCAAA GCCATTAAGC GTATTACCAA TCACTATGCT ATCGATACTG AGCCATCATG GTATCCTGAT GGAAAGTCGT TGATTTTTAC ATCAGAGCGC GGTGGTAGAC CACAGATTTA TCGCGTAGAG TTGAGCTCAG GTAAAGTGAG TCGTGAAACC TTTGAAGGTG AATGGAACCT CGGTGGTTCA ATTACCCCTG ATGGTCGCAG TATGATTTTT GTTAATCGCA CGAACGGTAA ATTTAATATT GCGCGTATGG ATTTAAGTAC GCGTTTTATG CAGGTGCTGA CATCGACACG TTTGGATGAA TCTCCAAGTG TTGCCCCTAA TGGTACTATG GTGATCTATG GCACCACATA CCAAGGCAAG CAAGTATTAG CAGCTGTTTC TACGGATGGA CGTTTTAAAG CAAGATTACC GGCAGGTCAA GGTGAGGTGA AATCACCTTC TTGGTCACCG TTTCTCTAA
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Protein sequence | MRILAKWLAL AVLLCTTPAK AALDIVITEG VDAARPIAVM PFVWQGPGAA PQAIADVVMS DLVRSGTFKP LDELGLPQRN IGTAAQFQAN SWSSVGAEAL VLGTVKPYGT DQYLVSFDLI DLVKAQNQAL KGPVSATEFL MDSRQTVISA AQFRQYGHRI SDIVYEKLTG IRGAFLTRIS YVVVNHTQKA PYQLMVADYD GVNEQMLLRS PEPLMSPTWS PDGRRLAYVS FENKKAEIFV QDLYTQVRTK VSSFPGINGA PAFSPDGKSL AITLSKDGQP EIYIIDIATK AIKRITNHYA IDTEPSWYPD GKSLIFTSER GGRPQIYRVE LSSGKVSRET FEGEWNLGGS ITPDGRSMIF VNRTNGKFNI ARMDLSTRFM QVLTSTRLDE SPSVAPNGTM VIYGTTYQGK QVLAAVSTDG RFKARLPAGQ GEVKSPSWSP FL
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