| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_2404 |
|---|
| Symbol | |
|---|
| ID | 7089367 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | + |
|---|
| Start bp | 2875112 |
|---|
| End bp | 2876248 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 643461298 |
|---|
| Product | hydrogenase (NiFe) small subunit HydA |
|---|
| Protein accession | YP_002358322 |
|---|
| Protein GI | 217973571 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1740] Ni,Fe-hydrogenase I small subunit |
|---|
| TIGRFAM ID | [TIGR00391] hydrogenase (NiFe) small subunit (hydA)
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0274072 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.000408774 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGACACAC ATGCAGCCCT ATATGAACAG GGAAAGGCGC GCTTAGATGC GTTACGCCAA
TTCGCTCCCC GTCAACAACA ATCGCTGATT GAGAAAATGC AACAGCACGG CATTAGCCGC
CGTGATTTTA TGAAGTGGAG TGCCATGGTG ACGAGCATGC TCGCATTGCC GCTCCCCTTT
AGTAACTTAG TAGCCGAAGC TGCCGAATTA GCCGACCGTG TACCCTTAAT CTGGTTACAC
ATGGCCGAAT GTACTGGCTG CTCAGAATCC TTAATTCGTA CCGATACCCC CAATCTAGAT
TCGCTGATTT TTGATCATAT CTCCTTGGAA TATCACGAAA CCTTAATGGC TGCTGCGGGT
TGGCAAGCCG AAGAAAACCT CGAAAATGCA CTCGAAACCT ACAAGGGCCG CTATTTACTG
GCCGTTGAAG GGGCGATTCC AACCGCCAAT AACGGCAGTT TCCTCACTGT AGGCTGTAAA
GGCCACACAG GGTTAGAAAT CATCAAACAT GCTGCAGAAG GCGCCGCCGC GATTATCTCT
GTTGGCACTT GTGCAGCGTT TGGTGGCGTG CAAGCAGCCT ATCCAAACCC AACGGGGGCG
AAAGGCGTGC ACGAAGTGGT CAGTAAACCC GTCATTAACT TAGGCGGTTG CCCACCGAGC
GAAAAGAACA TAGTCGGCAC TTTGATGTAC TTCATCATGT TCGGCAAATT ACCTGCGCTG
GATATGTTTA ACAGACCTAA ATGGGCTTAC GGCGCACGGG TACACGATAA CTGTGAACGT
CGCGGCCGCT TTGATGCCGG TGAATTCGTT GAAGAATTTG GCGATCACGG CGCGAAAGAA
GGCTACTGCC TGTATAAAGT CGGTTGTAAA GGTCCATACA CCTATAACAA CTGCCCAACC
GAGCGCTTTA ACCATCATAC CAGCTGGCCA GTACTTGCTG GACACGGTTG TATGGGCTGC
TCAGAACCTA ACTTCTGGGA TGACATGGCC GACTTTGAAA AACCCCTTGG CCGTCAACTC
CTCCATGGAT TGGATGCGAC CGCAGATACT ATTGGTGCGG TGATTTTAGG CGCGACTGTG
GTGGGCATTG GAGCCCATGC CGTTGCCAGT ATTTTTGCCA AACCGCTGGA GGAATAA
|
|---|
| Protein sequence | MDTHAALYEQ GKARLDALRQ FAPRQQQSLI EKMQQHGISR RDFMKWSAMV TSMLALPLPF
SNLVAEAAEL ADRVPLIWLH MAECTGCSES LIRTDTPNLD SLIFDHISLE YHETLMAAAG
WQAEENLENA LETYKGRYLL AVEGAIPTAN NGSFLTVGCK GHTGLEIIKH AAEGAAAIIS
VGTCAAFGGV QAAYPNPTGA KGVHEVVSKP VINLGGCPPS EKNIVGTLMY FIMFGKLPAL
DMFNRPKWAY GARVHDNCER RGRFDAGEFV EEFGDHGAKE GYCLYKVGCK GPYTYNNCPT
ERFNHHTSWP VLAGHGCMGC SEPNFWDDMA DFEKPLGRQL LHGLDATADT IGAVILGATV
VGIGAHAVAS IFAKPLEE
|
|---|
| |