| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_2302 |
|---|
| Symbol | |
|---|
| ID | 7087716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | + |
|---|
| Start bp | 2744464 |
|---|
| End bp | 2746824 |
|---|
| Gene Length | 2361 bp |
|---|
| Protein Length | 786 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 643461200 |
|---|
| Product | alpha amylase catalytic region |
|---|
| Protein accession | YP_002358224 |
|---|
| Protein GI | 217973473 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.073428 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATATTAA ACCTGCGGAC TCTCACCACT TCCTTAGTGA TTATGCTTAG CCTAGGCGCC
TCTTCCAACA CAGCGCAGGC AAGTTCAAGC AGTCTCTCTT TACCACTTCA AAGCACATCA
AGCCAGCCTC AAGACCTGAC ACTTGAACCC GCTTTTTGGT GGGCGGGGAT GCACAATCCT
GAGTTACAGT TGATACTGTA TAGCCGCGAT TTCCCTAGCT TACCGCAGCA GCTTAAGGTT
GATATCCAAG GACAAGGCAT CACGCTAAAA AGCCTTGAAC ACACTGATAA CCCTCACTAT
CTGTTTATCA ATTTAGATCT GAGCCAAGCT GCGCCGCAAA CCTTTGAGCT GGTGATTTCA
AGCACTGACT CGGCGTTAAA AACCAACACG CCTCTTTATC GCCTGCCCTA TACGTTGCAA
GCGCGTGTTA AGGGCAGCCG TGAACGCCAA GGGTTTAGCA ATAAGGATGT GATTTACCTT
ATCACCCCGG ACAGATTCGC CAATGGCGAC ACGAGCAATG ACAATCAGGC CGATATGCTA
GAGCAAGTTG CGGCTAACTC TCCTAGCAAT CTTAGCAATC CCAGCACCCC CTATTATCCC
GATGCTCGCC ATGGCGGCGA TATCGCCGGG ATCAGTCAGC ACTTAGCGTA TCTGGCAAAG
CTCGGGGTGA CTCAGTTATG GATCAATCCA CTGCTTGAGA ATAATCAAGC CCACTATTCA
TACCACGGTT ACTCGATTAC CAATTTGTAC CGCGTCGATC CCCGCTTTGG CAGCAACGAG
GATTATAAAG CCTTAGTCGC TAAGGCTAAC AAGCTTGGCC TTGGGGTAAT TAAAGATGTT
GTCGTGAATC ATATCGGCTC TAATCATTGG TGGCTCAACG AGTTACCTAG CCAAGACTGG
CTCAATGAGT TACCTAGCCA AGACTGGCTC AATGACGCCA CAAAAACGCC GCTAAACAAT
CACGAATCCA AACCTAACTT CATTCAGTCT ACCGATACCA AATCCAGCGC CATCAAATCC
AGCATTACCA GTCCACGTTT CACCAGCCAT AGGCGCACCA CAGTGCAAGA TCCCTACGCG
GCAGCGCAAG ATCATATCGA TTTTGTCGAC GGCTGGTTTA CCGACACTAT GCCGGATCTG
AATCAAAGCA ATCCCAAACT GGCAACCTAT CTTATCCAAA ACAGTATTTG GTGGGTCGAG
TACGCAGGAC TTTCAGGGAT CCGCGAAGAT ACTTATTCCT ACGCCGACAA AGAGTTTCTC
GCTAAATGGT CTAAGGCCGT AATGACTGAG TACCCGAATT TTAATATTGT GGGCGAAGAA
TGGACCGCAA ACCCCATCAC AGTGTCCTAT TGGCAAAAGG GCAAAATCAA TGCCGATGGC
TATACCTCAG ATTTACCCAG TTTGATGGAC TTCCCGCTAT ATGAAAAATT AATTGCCAGC
CTCAATGAGC CAGAAAGCTG GGACACAGGT TTTATCAAGC TTTACGAGAT GTTAGCCAAC
GATGTTGTGT ATGCCGATCC CAGTAAACTA GTGCTATTTG AAGGCAATCA CGACACCAAT
CGTATCTTCA GTTTAGTGAA AGAAAATATA GACTTATACA AGATGGCACT CACCTATATA
CTAACCGCCA AACGCATTCC GCAGCTGTTC TACGGTACAG AAGTGTTAAT GACCAGCCCG
ACAGAAGGCC GTCACGATGG TGTTGTGCGC AGTGATTTCC CCGGTGGGTT TGCCAACAGT
GCCACTAACG CCTTTACCGG CCAAGGACTG AGTGAACCCC AGCGACAAGC ACAGCAATTT
GTACGAACCC TACTGAATTA CCGTAAACAA TCTCCTGCGC TACAATCGGG CGATTTACTG
CACTTTGTAC CGCAAGATGG TGTCTATGTG CAATTTCGTT GCGCATTAAA TGCGCCATTA
TCAGCTGAAC AGAAAGCCGA GGCGCTCAAG TCACGAATAC AAAACAATTC TCTAACCCAA
CACAATGCCT GCACTCAGCC CTCGGCCGAT AAAGTCATGG TGATTTACAA TAAGAATGAC
AAGGCAGTCA CGCTAGATAT AAACCGCTTT GCCAGTGTAC TTGGCGATAG CGGCGCCGCT
ACAGATATCA TCAGTGGCAA AACAGTTTCA CTCAATCAAG CGATAACATT GCCCCACGCA
GGGGTTACTA TCCTTGAGCT TAAGCCTAAT TCTAAGACTA AGACTAAGAC TAAGACTAAG
TCGCCGCAGA ATGCTGGCTT GCCGAGCCGC CAAGATTCAA TGTACCCGGG GAACCAAACT
AACGCTTTAA CGCGCGCTCA TACTAACAAC AGTGCTAACA ACCTAGCCAA ACACTCAACT
CGAAAAGGAA CTCAGTCTTG A
|
|---|
| Protein sequence | MILNLRTLTT SLVIMLSLGA SSNTAQASSS SLSLPLQSTS SQPQDLTLEP AFWWAGMHNP
ELQLILYSRD FPSLPQQLKV DIQGQGITLK SLEHTDNPHY LFINLDLSQA APQTFELVIS
STDSALKTNT PLYRLPYTLQ ARVKGSRERQ GFSNKDVIYL ITPDRFANGD TSNDNQADML
EQVAANSPSN LSNPSTPYYP DARHGGDIAG ISQHLAYLAK LGVTQLWINP LLENNQAHYS
YHGYSITNLY RVDPRFGSNE DYKALVAKAN KLGLGVIKDV VVNHIGSNHW WLNELPSQDW
LNELPSQDWL NDATKTPLNN HESKPNFIQS TDTKSSAIKS SITSPRFTSH RRTTVQDPYA
AAQDHIDFVD GWFTDTMPDL NQSNPKLATY LIQNSIWWVE YAGLSGIRED TYSYADKEFL
AKWSKAVMTE YPNFNIVGEE WTANPITVSY WQKGKINADG YTSDLPSLMD FPLYEKLIAS
LNEPESWDTG FIKLYEMLAN DVVYADPSKL VLFEGNHDTN RIFSLVKENI DLYKMALTYI
LTAKRIPQLF YGTEVLMTSP TEGRHDGVVR SDFPGGFANS ATNAFTGQGL SEPQRQAQQF
VRTLLNYRKQ SPALQSGDLL HFVPQDGVYV QFRCALNAPL SAEQKAEALK SRIQNNSLTQ
HNACTQPSAD KVMVIYNKND KAVTLDINRF ASVLGDSGAA TDIISGKTVS LNQAITLPHA
GVTILELKPN SKTKTKTKTK SPQNAGLPSR QDSMYPGNQT NALTRAHTNN SANNLAKHST
RKGTQS
|
|---|
| |