| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_2296 |
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| Symbol | |
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| ID | 7087710 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | - |
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| Start bp | 2732727 |
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| End bp | 2734976 |
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| Gene Length | 2250 bp |
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| Protein Length | 749 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 643461194 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_002358218 |
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| Protein GI | 217973467 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00930711 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.870348 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTACG GCGTTAATCT TCCAGATCTG CTCGACCATG CTGACGTTAA ACTCGCCCAC
AATGTCAGCA TAGCTTGCTA TAGCAGTGTT CTCTCTATGC TGCTTAATGG CGCACCGCTA
CATGAAATCT TGCACGCCTT AGTGCTAAAA ATCGAAGCGC AAAAGATAGG CACTCGTGGA
TCTATATTAC TGCTCAGCGG TGATGGCAAA CGTTTGTTGT TAGGTGCTGC GCCCCATTTG
CCCGACAGTT ACAACCAAGC GATTAATGGG GTCGAGATTG GCCCAAATGT TGGCTCCTGC
GGAACAGCGG CGTATTTCGC AAAGCGAGTT ATCGTTGAAG ACATAGCTAC ACATCCCTAT
TGGGAAAATT ATAAAGAACT GCCATTACGC GCCGGTCTTA AATCTTGTTG GTCTGAACCT
ATCAAAGATA CTCAAGGCAA AGTGCTCGGT ACATTTGCCA TGTACTACGA TACGATAAAG
TCCCCAACAG AGCTTGATTT AGAGCTTATT TCAGAGGCAG CACGATTAGC CAGTTTAGCC
ATTGAGCGCA GTCGGGCAAT GGAGTTTCAG CGTTTAGCAG TGAAAATTTT TGATCGCTTA
CCTTTGGCAC TGGTTATCTC CAATTCCGAT GATTCCGTTC TCTATGCTAA CCCCGCTTTT
AAACACATCG TTCTTCCACA AGATATTGAT ATCGAGAACT TTAACCCAAA GATGTTTTTA
TCTGCGTCTC AATCGAATGA GTTAGTCGGC CTATTTGAGC ATTTAGCGCA GGATAAAATG
TGGCAGGGGG AATTGGTTGG CTTAAGGGGC AATGGCGAGG AGTTTTATCT AGATCTTATC
GTCACCACAT TTAGAGAGCC CAACGGATTA CAGCCGTGTT TTGCGTGGCT ATTTTCAGAT
ATTAGTGAGC GTAAAAAAGC GGCGCAGCTG ATTAAGTATC AGGCTAATAA TGACTCGCTG
ACTGGGCTTG CTAACCGTAA TGCCTTGTTT AAACTGATCC AATCCTTCAT TACCTCCGAC
AGTCTGACGC CTGGCTTTAG TTTTATGCTG ATGGATTTAG ATAACTTTAA ACAAGTTAAC
GACACCCATG GCCACGACAA AGGTGATGCG TTATTAGTGC AAGTGGTGCG GCAGATTTGC
GAGTGCCTCA ATGACACTAT GGTGTTTGCG CGCCTCGGCG GTGATGAGTT TGCCTTACTG
TTACCTGGGA TAGTCAACCA GAAAGAGTTG GCGCAACTCG CTGAAACAAT TAATAAGCAT
GTTGCTAAAC GTTATGTGCT TGCCGATGGT AAAGGCGTTT ATAGTTCGGT AAGTATAGGG
ATTGCGCGTT TTCCTGAAGA TGCCCTCGAT CTCGAGCAGC TGTTAAATTG CGCCGATCAG
GCCATGTATA TTTCAAAGGC TAATGGTCGT AATCGTTATC ATTTTTTTAC TGAGCAAATG
CAGCTTAATG CCGAGCGCAT TGCCAGCCTT CATAATCAAC TCAAGCAGGC ACTCGATCAA
CAGACCTTCG AGCTTTATTA CCAGCCCATA GTGAATGCGA CCACAGGTTT GATTGTTCGC
GCCGAAGTGC TGCTGCGCTG GCAGCATGAA GGGCAATTCA TTCCCCCCGA TGAGTTTATT
CCCATTGCGG AGAACAGCGG CTTAATCGTT GATATTGGTC GAGATGTGCG CCTTGGCGCG
ATGCAAACCA TCTTAGAGAT GCAGGCTCAC AATTGGCCGA TTAACTTATC GGTGAATGTG
TCGACCTTTG AGTTTTGGTC CCATGAACTG CAAGATGCCT TTGTGGATTC CTTCGCTGCA
ATTACCGAGC AACTTGAGGT AACAGATTTC CCCTATGACA GATTAACCCT TGAGATCACT
GAGTCTTTGC TGATGAAGCA ACATACACAT CTTATTGATG TGCTTAATGG TCTGCGGATT
AAGGGGATCA AAATTTCCTT GGATGACTTT GGTACTGGCT ACTCGTCCTT GTCCTATTTG
GCTAATTTCC CTATCGATCA AATTAAAATC GACAAGAGCT TTATCGACCG ATTAGACGAA
GGCAAGCGCC ACGAAGCGTT GGTGGAGGCC ATAGTGCGGT TAAGCCATGC GTTAGATTTA
ACCGTGACGG CAGAAGGGGT GGAAACTGAG TCCCAACTTA AGTTTGTGAT GTCGAATCAT
ATTCAAGAAA TTCAAGGTTA CCTTTTCTAT AAACCTATGC CTAAAGCCGC CTTCTTTGCG
CTGTTGGCAA AGCAAGCTGA GCTGCATTAG
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| Protein sequence | MAYGVNLPDL LDHADVKLAH NVSIACYSSV LSMLLNGAPL HEILHALVLK IEAQKIGTRG
SILLLSGDGK RLLLGAAPHL PDSYNQAING VEIGPNVGSC GTAAYFAKRV IVEDIATHPY
WENYKELPLR AGLKSCWSEP IKDTQGKVLG TFAMYYDTIK SPTELDLELI SEAARLASLA
IERSRAMEFQ RLAVKIFDRL PLALVISNSD DSVLYANPAF KHIVLPQDID IENFNPKMFL
SASQSNELVG LFEHLAQDKM WQGELVGLRG NGEEFYLDLI VTTFREPNGL QPCFAWLFSD
ISERKKAAQL IKYQANNDSL TGLANRNALF KLIQSFITSD SLTPGFSFML MDLDNFKQVN
DTHGHDKGDA LLVQVVRQIC ECLNDTMVFA RLGGDEFALL LPGIVNQKEL AQLAETINKH
VAKRYVLADG KGVYSSVSIG IARFPEDALD LEQLLNCADQ AMYISKANGR NRYHFFTEQM
QLNAERIASL HNQLKQALDQ QTFELYYQPI VNATTGLIVR AEVLLRWQHE GQFIPPDEFI
PIAENSGLIV DIGRDVRLGA MQTILEMQAH NWPINLSVNV STFEFWSHEL QDAFVDSFAA
ITEQLEVTDF PYDRLTLEIT ESLLMKQHTH LIDVLNGLRI KGIKISLDDF GTGYSSLSYL
ANFPIDQIKI DKSFIDRLDE GKRHEALVEA IVRLSHALDL TVTAEGVETE SQLKFVMSNH
IQEIQGYLFY KPMPKAAFFA LLAKQAELH
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