| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_2276 |
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| Symbol | rnfD |
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| ID | 7086403 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | + |
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| Start bp | 2703443 |
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| End bp | 2704492 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 643461174 |
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| Product | electron transport complex protein RnfD |
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| Protein accession | YP_002358198 |
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| Protein GI | 217973447 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
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| TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.034866 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.800478 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCGTTTA AAATAGCCTC ATCACCCCAT GTAACGCGTA ACTTGCATAC CTCAACGGTC
ATGCAAAGGG TGATTTTATG TTTACTGCCG GGCCTTGTCG TGCAATGTGC CTTTTTTGGC
TGGGGCACAC TTGTGCAAGT CCTGCTGGCG ATCCTCGTCG CCTTAAGCTG CGAAGCCGCA
GTGATGAAAC TTCGCAATCG CAATATCAAA GCGAGCCTTA GCGATAACAG CGCCATGCTC
ACCGCCATCT TAATTGGTGT CGCCATTCCG CCCCTCGCCC CTTGGTGGAT GATCGTCATG
GGCACCGCCT TTGCGATCGT CATAGTTAAG CACCTCTACG GCGGCTTAGG CCATAACCTA
TTCAACCCTG CAATGGCGGC ATATGTATTG CTGTTAGTCT CGTTCCCTGT GCAAATGACC
ACCTGGATAG CACCGAGCAC CGTTGCACTG CATTCACCCA GCCTTGTTGA AAGCTTGCAA
CTTATCTTTA ATGTTGGCGC GCACGTGAAT ATGGAGCAGT TCCGTTTAGG CATTGATGGC
ATGACAATGG CGACGCCACT CGATACCCTC AAAACCGATT TATCCATGGG ATTAACCACC
ACAGAAAGTC TCACCAAAGC CATTTTTGAT GGCAGTACAG GCGTAGGTTG GTTCTGGGTG
AACTTGGCCT ATCTTGCTGG CGGGTTAGTG TTACTTAAAC TAAAAGCCAT TCGCTGGCAC
ATCAGCACTG GCGTGTTATT AGGTCTCTTT GTGGCATCGA GTATCGGTTT CTTACTGTCA
CCCGATACCC AAGCCAGTCC ACTGATGCAT CTGTTTTCTG GCGCGACCAT GTTAGCGGCG
TTTTTTATTG CCACCGATCC CGTTACAGCC GCAACCAGTT CCCGTGGTCG CATTATCTTT
GGCGCGTTAA TTGGTGTGTT GGTGTATATC ATCCGCACCA AAGGCGGTTA CCCTGACGCC
TTCGCCTTTG CCGTGTTACT GGCCAACCTC TGTGCGCCCT TTATTGACTA TTACGTGCGT
CCACGTACCT ATGGTCATTC AACGAGCTAA
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| Protein sequence | MAFKIASSPH VTRNLHTSTV MQRVILCLLP GLVVQCAFFG WGTLVQVLLA ILVALSCEAA
VMKLRNRNIK ASLSDNSAML TAILIGVAIP PLAPWWMIVM GTAFAIVIVK HLYGGLGHNL
FNPAMAAYVL LLVSFPVQMT TWIAPSTVAL HSPSLVESLQ LIFNVGAHVN MEQFRLGIDG
MTMATPLDTL KTDLSMGLTT TESLTKAIFD GSTGVGWFWV NLAYLAGGLV LLKLKAIRWH
ISTGVLLGLF VASSIGFLLS PDTQASPLMH LFSGATMLAA FFIATDPVTA ATSSRGRIIF
GALIGVLVYI IRTKGGYPDA FAFAVLLANL CAPFIDYYVR PRTYGHSTS
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