| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_2078 |
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| Symbol | emrD |
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| ID | 7088371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | - |
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| Start bp | 2459778 |
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| End bp | 2461010 |
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| Gene Length | 1233 bp |
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| Protein Length | 410 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 643460981 |
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| Product | multidrug resistance protein D |
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| Protein accession | YP_002358005 |
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| Protein GI | 217973254 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.1442 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00000857713 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCAGGCA CGCCACACTC TCCTATTCAT CACGATGTCA CTCCAGCGGC TAGTCAGTCT
AGTTTACTGT TAATGATTGT CTTTATGGTC GCCTGTGGCC AAATGGCGCA GACGATTTTT
GTGCCTGCCC TTCCGCAAAT TGCACTCGGG CTCAATGTGG ACGCCAGTCA ACTGCAAGCA
GTGATGGCCT GTTACTTACT CTCCTACGGG ATCTTTCAAT TTGTGTATGG CCCAGTGTCA
GATCGCATTG GCCGCAAAAT GCCACTCGTC GTGGGTATCG CTATTTTCAT CATAGGAGCA
GTGTTTGCGG CTCAGGCCAC AAGCTTTAAC CAACTGATTA TGGCGAGCCT TATCCAAGGG
TTAGGTACAG CAAGCGCGGG CGCTTTATGC CGGAGCATTC CCCGCGATCA TTACTTTGGC
GACCGACTGG TTAAATTTAA TAGTTATGTC TCGATGGCCG TAGTGTTTTT ACCTTTACTG
GCACCATTTA TCGGTAGCGC CAGTGCGGCC TACTTCGGCT GGCAAGCCGT GTACTGGGTG
TTAGCAGGAT TCGGTGCTGT GGTCTGGCTG TTATTGATAT TCGCCTTTAA AGAGTCATTA
CCTAAGGCGC AGCGGGAACA TCAAGCCGTT ATCGCATCCT ATCGGCATGT CCTGCGCCAT
AGAGCGTTTC GAGCTTATCT ATTTTCATTG ATCGCAACCT TTGCGGGTAT TGCGGCGTTT
GAAGCCATTG CCGGCGTTCT CTATGGCCAA TATCTTGGAC TGACGCCCTT CATGGTCAGT
TGTTATTTTG TGGCGCCGAT TCCAGGCTAT TTATTGGGCG CGCTGATCGC AGGTCGACAA
AACAAGCCAC GAAGAGTTAT TTATCAAGGT GTTGCGCTGC TCGGCGCTGG CGCCTTGTTC
ATGTTGATCC CGGGGCTTTT CAATTTGGTC GTCGGTTGGA GTTTACTGGT TGGATCGATT
TTATTCTTCA GTGGCGCCGG CATGCTGTTC CCTACCCTGA CCTCGGCGGC TTTAGAGCCA
TTTCCACGTC AAGCAGGAAT TGCGGGGGCA TTACTGGGAG GATTACAAAA TTTTGGTGCC
GGACTTGCCG CATTGACTAT GTCTTTAGTG CCTATGGGCG GCCAGTTGAG CATAGGTTTA
TTAAGCGCTG TCATGATGGT GTTAGTGATT TTGTCTTTGT ATTACGCCAG AGATCAAAAT
GACACTCACC ACAATTTGAT GCCACAGATT TAA
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| Protein sequence | MSGTPHSPIH HDVTPAASQS SLLLMIVFMV ACGQMAQTIF VPALPQIALG LNVDASQLQA
VMACYLLSYG IFQFVYGPVS DRIGRKMPLV VGIAIFIIGA VFAAQATSFN QLIMASLIQG
LGTASAGALC RSIPRDHYFG DRLVKFNSYV SMAVVFLPLL APFIGSASAA YFGWQAVYWV
LAGFGAVVWL LLIFAFKESL PKAQREHQAV IASYRHVLRH RAFRAYLFSL IATFAGIAAF
EAIAGVLYGQ YLGLTPFMVS CYFVAPIPGY LLGALIAGRQ NKPRRVIYQG VALLGAGALF
MLIPGLFNLV VGWSLLVGSI LFFSGAGMLF PTLTSAALEP FPRQAGIAGA LLGGLQNFGA
GLAALTMSLV PMGGQLSIGL LSAVMMVLVI LSLYYARDQN DTHHNLMPQI
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