| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1952 |
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| Symbol | |
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| ID | 7090119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | - |
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| Start bp | 2309994 |
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| End bp | 2313482 |
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| Gene Length | 3489 bp |
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| Protein Length | 1162 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 643460855 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002357879 |
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| Protein GI | 217973128 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00516748 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.328047 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCACA TATCAGCCCT AACGCCGCCA GCCGTCAAAA ATGGCAATCA AATTCAAACT
CTGTCCACCG TGGGCGGCGT TTGCCAAGCC GTTACACTCG CCAGTTTAGC GCGTCAACAT
AAGGGGACGA CCTTAGTTGT CACCAGTGAT ACGCCAAGCG CCTTAAGCTT AGAGCTAGAA
CTGAGTTATT TACTCAGTAA AACAGGCATT AAGGTCAGAT TATTCCCTGA CCGCGAAACC
TTGCCCTACG ACAGTTTTTC GCCCCATCAG GATTTGATCT CCCAGCGACT CGAAACCCTG
TCGCAGCTGT CTCAAATTGA GCAAAACATC GTTATCGTGC CCGTAACGAC CTTAATGATG
CGCCTGCCAC CTAAGGCCTA TTTAAGCGCC AACGTGTTTG TGCTGAAAAA AGGTGATAGC
TACAAGTTAC ACGATGTACG CCAGCATTTA ACCGACACTG GCTACCATTC GGTTGAGCAA
GTATATGAAC ACGGCGAGTT TGCGATTCGC GGCTCGATTC TGGATATCTT CCCCACTGGG
ATGAATATGC CGCTGCGCAT CGAGCTATTC GATGAAGAAG TGGAAACCAT CCGCCATTTT
GATCCTGAAA CCCAACGTTC ATTGCAACCT GTTGACTCGA TTCGCCTATT GCCCGCGAAG
GAATTCCCGA CCGACAGCTC GGCCATCGAA GGCTTTAGAC AAAGATACCG TCGCCGTTTT
GAGGTCATAG TCAAAGAGCC GGAATCAGTT TATCAGCTGG TGAGCCGCAA CTTGATGCCG
GCGGGGATTG AAAACTACCT GCCGCTGTTT TTTGATGACA CAGCCACCCT ATTCGATTAC
TTGCCCAAGG ACACTCAACT CGTCACCTTA GGGGATATCG AAAAGTCAGC GCGCGCGCAT
CTGCAAGAAG TCGAACATCG TTATCAAGAC AGACGAGTCG ATCCACTGCG GCCGCTACTG
GCACCTAAAG AGCTGTATTT ACTCATCGAA GAGTTATTTG CCGCCTTTAA ACCGCTGCCA
CGTTACCAAA TGCACGTACC GACGGATGGC ACTGAAGCGA CGAAAGCGGT CGTGATTGCC
GCCAGCACCC TGCCCGACAT CAGCGCCAAC CATAAATTAA AGCAACCACT GTTAGCGCTG
CAAGATTATG CCAGCAGCGC CAAACGCATG TTGTTTAGTG CCGAGTCCGA GGGTCGCCGC
GAAGCGCTAC TTGAATTGCT CGCTAAAATT CAGTTAAAAC CTGCGCTGTT TAACCATTTT
GATGAATTTA TTCAAAGTGA TGCCAAGTTA GGCCTTATCG TATCGCCGCT GTCACGCGGT
TGTTTGCTGC AGATCAGCGC CAAAGATGGC ATCAGTATCA TTTGTGAAAC TGAACTCTTC
GGCCATCGTA TTTCCCAGCA ACGTCGCCGT GAAAAACAGC GTCAGATCAG TAACGATGCC
CTGATTAAAA ACTTGGCCGA ACTCAAAGTC GGTCAACCCA TAGTGCATTT AGAACACGGT
GTTGCCCTCT ACAAAGGCTT AGTCACGCTA GATACAGGCG GACTGCTCGC CGAATACCTG
CAATTGGAAT ACGCCGGCGG CGATAAACTG TATGTGCCAG TGTCTTCATT GCACCTTATC
AGTCGCTACA GCGTTGGCGC CGACGAAGAC GCCCACTTAA ATAAACTCGG CAACGAGACC
TGGGCTAAAG CCAAGAAAAA AGCGATTGAA AAAATCCGCG ATGTTGCGGC CGAGCTGCTT
GATGTCTATG CCCGTCGCCA ATCTCGTCCC GGAGAAAGCT GCGAGATTGA CGAAGAAGAA
TACGCCCAAT TCGCTCGCGG CTTCCCCTTC GAAGAAACCG TCGATCAAGA AAGCGCCATC
ATCGCCGTGT TAGCCGATAT GCAATCGCCG ACCGCAATGG ACAGATTAGT CTGTGGCGAT
GTGGGCTTTG GTAAAACCGA AGTCGCCATG CGCGCCGCAT TTGTGGCCGT CAACGCCGGC
AAACAAGTGG TCGTGCTGGT TCCGACTACA TTGCTTGCCC AGCAACACTA TGAAAACTTT
AAAGACAGGT TTGCCGACTG GCCCGTGGTC ACCGAAGTGA TGTCACGCTT TCGCACCGCT
AAAGAGCAGA CTCAAGTGCT GCAGCAATTG GAAGAAGGCA AAGTCGATAT CGTTATCGGT
ACTCACAAGT TATTGCAATC TGAGGCCAAG TTTGAAAACT TAGGCCTGCT GATCATCGAC
GAAGAACACA GATTCGGTGT ACGTCAAAAA GAGAAAATCA AGGCCCTACG TGCCAACGTG
GATATCCTAA CCCTGACCGC AACGCCTATT CCACGGACCT TAAATATGGC CATGTCGGGC
ATGCGCGATT TATCGATTAT CGCCACCCCG CCCGCCAAAC GTTTAGCGGT AAAAACCTTT
GTGCGCGAAT CCGATCCTGC AACCGTGCGC GAGGCCATTT TGCGGGAAAT TCTCCGTGGC
GGCCAAGTGT ATTACCTGCA CAATAATGTT GAAAGTATTG AAAAATGTGC CCAAGGCATT
ATCGATTTAC TGCCAGAAGC GCGGGTAGTC GTCGCCCACG GTCAAATGCG TGAGCGCGAT
CTTGAGCGGG TGATGTCTGA CTTTTATCAC CAAAGATTCA ATGTGTTAGT CTGTACTACT
ATTATCGAAA CTGGTATCGA CGTCCCGAGT GCCAACACCA TTATTATTGA GCGCGCCGAT
ACCTTTGGTC TGGCGCAGTT ACACCAATTA CGCGGCCGCG TCGGACGCTC GCACCATCAG
GCTTATGCCT ATTTGATGAC GCCGCATCCT AAACGTATGA CTCCCGATGC GCGTAAGCGT
TTAGAAGCCA TTGATGCCCT TGAAGATCTC GGTGCAGGCT TTATGCTCGC GACGCAGGAT
TTGGAGATCC GCGGCGCAGG TGAACTCTTA GGCGATGAAC AGAGCGGCCA TATTTCGAAA
ATTGGTTTTA GCTTATACAT GGAAATGCTC GAAGCGGCAG TCAAAGCTTT AAAACAAGGC
AAAGAGCCAT CGCTGGCGCA AATGCTCAAT CAGCAATGCG AGATTGAACT GCGTATCCCC
GCCCTGCTAC CTGAGGCCTA TGTGAGCGAC GTCAATATTC GTCTATCGCT CTATAAACGC
ATCGCAGGTT GCGAAACCGA AGCGGCGCTG GATGAGTTAA AAGTCGAATT GATCGACCGT
TTTGGCCTAT TACCCGAACC GACGCGCAAC TTAATGGAAA TGACCCTCTA TAAACATGAG
GCGACTCGCT TAGGGGCGAC TAAAATAGAA GTGCACAGTA AAGGTGGCAG CATCGAATTT
AGTCATGATC ACGTCATCGA TCCTATGTTT ATTATTGGAT TACTCCAAAG CCAGCCACAA
ATCTATCGAA TGGAAGGACC GAATAAGTTA AAGTTCAGCC TTGCGGCCGA AACCAGCAAA
GACAGGCTCG CTTTAGTGAA ACTCTTGCTC GAACAATTAT CGCAACATCG TCTTGGAGAT
AATAAATAG
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| Protein sequence | MTHISALTPP AVKNGNQIQT LSTVGGVCQA VTLASLARQH KGTTLVVTSD TPSALSLELE
LSYLLSKTGI KVRLFPDRET LPYDSFSPHQ DLISQRLETL SQLSQIEQNI VIVPVTTLMM
RLPPKAYLSA NVFVLKKGDS YKLHDVRQHL TDTGYHSVEQ VYEHGEFAIR GSILDIFPTG
MNMPLRIELF DEEVETIRHF DPETQRSLQP VDSIRLLPAK EFPTDSSAIE GFRQRYRRRF
EVIVKEPESV YQLVSRNLMP AGIENYLPLF FDDTATLFDY LPKDTQLVTL GDIEKSARAH
LQEVEHRYQD RRVDPLRPLL APKELYLLIE ELFAAFKPLP RYQMHVPTDG TEATKAVVIA
ASTLPDISAN HKLKQPLLAL QDYASSAKRM LFSAESEGRR EALLELLAKI QLKPALFNHF
DEFIQSDAKL GLIVSPLSRG CLLQISAKDG ISIICETELF GHRISQQRRR EKQRQISNDA
LIKNLAELKV GQPIVHLEHG VALYKGLVTL DTGGLLAEYL QLEYAGGDKL YVPVSSLHLI
SRYSVGADED AHLNKLGNET WAKAKKKAIE KIRDVAAELL DVYARRQSRP GESCEIDEEE
YAQFARGFPF EETVDQESAI IAVLADMQSP TAMDRLVCGD VGFGKTEVAM RAAFVAVNAG
KQVVVLVPTT LLAQQHYENF KDRFADWPVV TEVMSRFRTA KEQTQVLQQL EEGKVDIVIG
THKLLQSEAK FENLGLLIID EEHRFGVRQK EKIKALRANV DILTLTATPI PRTLNMAMSG
MRDLSIIATP PAKRLAVKTF VRESDPATVR EAILREILRG GQVYYLHNNV ESIEKCAQGI
IDLLPEARVV VAHGQMRERD LERVMSDFYH QRFNVLVCTT IIETGIDVPS ANTIIIERAD
TFGLAQLHQL RGRVGRSHHQ AYAYLMTPHP KRMTPDARKR LEAIDALEDL GAGFMLATQD
LEIRGAGELL GDEQSGHISK IGFSLYMEML EAAVKALKQG KEPSLAQMLN QQCEIELRIP
ALLPEAYVSD VNIRLSLYKR IAGCETEAAL DELKVELIDR FGLLPEPTRN LMEMTLYKHE
ATRLGATKIE VHSKGGSIEF SHDHVIDPMF IIGLLQSQPQ IYRMEGPNKL KFSLAAETSK
DRLALVKLLL EQLSQHRLGD NK
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