| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1896 |
|---|
| Symbol | yebU |
|---|
| ID | 7090063 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 2237167 |
|---|
| End bp | 2238684 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 643460800 |
|---|
| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
|---|
| Protein accession | YP_002357824 |
|---|
| Protein GI | 217973073 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
|---|
| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.167738 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATATACT CGCGCCAGTT GATACACAGT CTATTTTCCT ATGGTTCAAT GAAATCAATG
GTTCAATTAA ATCAAAATTT TATCGATACA ATCACCCAAG AACTCCCCGC CCATTTATCC
ATGGACGAGT TTATTGCCGC CTGCGACAGG CCGCTTAGAC GTTCAATTCG GGTCAATACC
TTAAAAATCA GCAGCGACGA CTTTAAGACT CTGATGCAAC CTAAGGGCTG GACGTTCGAT
CCCATTCCTT GGTGTGAAGA CGGATTTTGG ATCAGTTACG ATGAAGAAGA ACAACTCGGC
AATGCCTTAG AGCACATTCA GGGCCTATTC TACATTCAAG AAGCTAGCTC TATGTTGCCA
CCAACCGCAC TTTTTACGCC TAGTGCATTT ACGACTAGTG CAAAGTGGCA GTGCGTACTC
GATCTCGCCT CTGCGCCGGG TTCAAAAACC ACGCAAATGG CCGCATTGAT GCAAAACCAA
GGTTTATTGG TGGCGAATGA GTATTCGGCG AGCCGCGTGA AAGTATTGCA CGCCAATGTG
CTGCGCATGG GCGCAAGTCA CTGCGCTCTC ACCCATTTCG ATGGCCGTGT GTTTGGCGAA
TACCTATACG AAAGTTTCGA TGCCGTGCTC ATTGATGCGC CCTGTGGCGG CGAAGGCACA
GTGCGTAAAG ACGTCGATGC GTTAAAACAT TGGAGTCTTG ACGATGTGTT GGCGATTAGC
GAAACCCAAA AAGCCTTAAT CGAATCGGCG TTTCTCGCCC TGAAACCCGG CGGCAGTTTG
GTCTACTCGA CCTGCACCTT AAACCGTCTC GAAAACCAAG GCGTGTGCGA GTATTTAAAA
CAAGTCTACG GCGATGCCGT GCAATTTGAA TCCTTAAGTG ATTTATTTGA TGGCGCTGAG
CGAGCCACGA CTGCCGAAGG CTTCTTGCAT GTCTGGCCGC AGATTTACGA CAGTGAAGGT
TTCTTTGTCG CTAAATTGAC AAAAACTGCC TCTGTGCCGC GGTTACAGCC AGAGCCTAAA
CTGCAGAAAA ACTTCCCCTT CACGCCCGCA TCAGCGAAAC AAGCACAAGG GATCAAAGAC
TATTTTCAGC AGGATTTAGG CATCAGCTTA CCAGACGAAC TCATCATGGT TCGCGATGAT
GAATTCTGGC TATTTCCACA TGAATTCAAC GCTTTTATCG GCCGTATGCG CTTTCAGCGT
ATTGGCATTA AACTCGCCGA TAGCAGTAAG CACGGTTTTA AAGTCCGCCA TGAAGCGATT
ATTGCTTTAG CGGGAAAACA ACTTAGCCCA ACGGCAAAAA CGGTCGATGT GAGCGATGTT
GAAGCCAAAG AGTATTTGAT GGGGCGAGAT ATTCCCTTAG CTACCGCAGA CAAAGCCCAA
GGTGAAGTGA TCGTCTGTTA TGGCGGCGCG CCGTTAGGCA TGGCGAAACA TTTAGGCAAT
AAGTTAAAAA ACAACCTGCC CAGAGACTTA GTGAAAGATA AAGTGTTATT GCTACCAGAA
CAGACAAAAT CGTTATAG
|
|---|
| Protein sequence | MIYSRQLIHS LFSYGSMKSM VQLNQNFIDT ITQELPAHLS MDEFIAACDR PLRRSIRVNT
LKISSDDFKT LMQPKGWTFD PIPWCEDGFW ISYDEEEQLG NALEHIQGLF YIQEASSMLP
PTALFTPSAF TTSAKWQCVL DLASAPGSKT TQMAALMQNQ GLLVANEYSA SRVKVLHANV
LRMGASHCAL THFDGRVFGE YLYESFDAVL IDAPCGGEGT VRKDVDALKH WSLDDVLAIS
ETQKALIESA FLALKPGGSL VYSTCTLNRL ENQGVCEYLK QVYGDAVQFE SLSDLFDGAE
RATTAEGFLH VWPQIYDSEG FFVAKLTKTA SVPRLQPEPK LQKNFPFTPA SAKQAQGIKD
YFQQDLGISL PDELIMVRDD EFWLFPHEFN AFIGRMRFQR IGIKLADSSK HGFKVRHEAI
IALAGKQLSP TAKTVDVSDV EAKEYLMGRD IPLATADKAQ GEVIVCYGGA PLGMAKHLGN
KLKNNLPRDL VKDKVLLLPE QTKSL
|
|---|
| |