Gene Sbal223_1830 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbal223_1830 
Symbol 
ID7086504 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS223 
KingdomBacteria 
Replicon accessionNC_011663 
Strand
Start bp2160291 
End bp2161355 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content46% 
IMG OID643460734 
Productefflux transporter, RND family, MFP subunit 
Protein accessionYP_002357758 
Protein GI217973007 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000238284 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.23398 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAAGT CAAACATTGC TAAATTCGCC CTACCCCTGC TAATGATTTC AATGCTAGCA 
GCCTGTGGTA AGGAAGAAGT GGCCAAAAAA GAAGAAAAAT ATGCCATTCC CGTCGAAACC
ACCACAGTGA TGCAAGGAAA CGTTTCATCT TTCTACAGCA CAACAGCCAC CTTAGAAGCA
CCTCAAGAAG CCAATGTCGT CAGCCGCATT TCTGGACTCA TTGAATCACT TGCCGTTGAA
GAAGGTGACC GCGTACAAAA GGGCCAAGTG CTCGCCGTTA TCGATGCCAA AAGACAGCAA
TACGATTTAG ACCGCTCAGA AGCCGAAGTT AAAATCATTG AGCAGGAATT GAATCGTCTG
AAGAAAATGG GCAACAAAGA ATTTATCAGC GCAGATTCGA TGGCCAAACT TGAGTATAAC
TTGCAAGCCG CCATCGCCAA GAAAGATCTT GCCGAGCTAC AAGTCAGAGA AAGCCGCGTA
CTATCCCCTA TTAGCGGCGT CGTCGCTAAA CGTTATGTGA AAGCAGGCAA CATGGCGAAG
GAATTTGGCG ACTTGTTCTA CATAGTCAAT CAAGATGAAC TCCACGGTAT AGTCCATCTG
CCAGAGCAAC AACTTGCCAG CTTAAGACTC GGCCAAGAAG CACAAGTGTT CAGCAATCAA
CAAAGTAAAA ATGCTATCCA TGCCAAAGTG CTGCGGATAA GCCCGATTGT TGACCCACAA
AGTGGCACGT TTAAAGTGAC ATTAGCCGTA CCGAATCAAG AGGCGCGCCT AAAAGCAGGG
ATGTTTACCC GTGTAGAGCT TAAGTATGAC ACCCATGAAA ACGTGATTAC CGTTCCCTAT
AGCGCCCTGA TTAACCAAGA TAACAGGCAA GCTTTGTATG TTATCGATGG CACTAATGCT
AACCGCCGTG AAGTCGAAAT TGGCTATCGT GAAGGTGACT CTGTAGAAGT GATTGCAGGC
ATTAACCCAG GTGAACAAGT CGTGACCCGT GGCCAGCAAA ACTTGAAAGA CCAATCCTTA
GTCGAAGTGA TCACCCCACT CGATCTTGCT TCCGCTAAGA ACTGA
 
Protein sequence
MEKSNIAKFA LPLLMISMLA ACGKEEVAKK EEKYAIPVET TTVMQGNVSS FYSTTATLEA 
PQEANVVSRI SGLIESLAVE EGDRVQKGQV LAVIDAKRQQ YDLDRSEAEV KIIEQELNRL
KKMGNKEFIS ADSMAKLEYN LQAAIAKKDL AELQVRESRV LSPISGVVAK RYVKAGNMAK
EFGDLFYIVN QDELHGIVHL PEQQLASLRL GQEAQVFSNQ QSKNAIHAKV LRISPIVDPQ
SGTFKVTLAV PNQEARLKAG MFTRVELKYD THENVITVPY SALINQDNRQ ALYVIDGTNA
NRREVEIGYR EGDSVEVIAG INPGEQVVTR GQQNLKDQSL VEVITPLDLA SAKN