| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1806 |
|---|
| Symbol | |
|---|
| ID | 7088340 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 2128441 |
|---|
| End bp | 2130675 |
|---|
| Gene Length | 2235 bp |
|---|
| Protein Length | 744 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 643460710 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_002357734 |
|---|
| Protein GI | 217972983 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0000621325 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGTGCCATA ATCACAGACA GTTAACACAA GCAAATTTTC AAAGGGACTT TTCTTTGCAT
CTACCCGCCT TCCAAACCGC CCATCTCAGA CTAGCCATTA TTCTGGGTGT ATTCGGCTTA
GTCCTGAATC TTTTTCCCAT CCCTTTATTC GCTAATGTGC AATTGATTCT CGGCAACGTG
GCCGTTGTGA TAGTGGCAAT ACTCTTAGGG CCTTGGTATG CATTGATCAC CGCCCTATTT
ACCGCCACGG GACTCATGAT CGTGTGGTCG AGCCCGCATG TGTATTTACT GTTTTTACTC
GAAGCATTAT GGCTTGGTTT TGCAAGGCGC CGAGATATTC AAATACTCTA TGCCAGTGTG
AGTTATTGGG TGTTATTGGG GATCCCGCTG TTAGCCATTT ATGTGGCTGT CATTGCTAAA
ATGCCCGCCA GCCACATTCC TTTTACTGCG ATAAAACAAG CCGTTAATGG CATGATTTAC
GCTGCAATTG GTGAACTCTG TGTGGTTGCT ATTCCAAGCC TATGGTATTT TAAAGGCAAG
CTGACCAATC TTAACCGGCG CACTTTTAGC TCGCAGCTCA GTTACTTGTT TACCTTAATC
ATTACTGTGA GTTTATTAGT TTCGTCCTTA GCCTTTAATC ACTTTTTCAT TGATAAACAA
CAGATGATGA TTAATCGCAA TCTGGACGAT ACGGCAACCC ATTTAAGCCA TGCAACCGAC
AACTATCTCG CTTACAACAC CCAAGTCATC GCTAGCACCG CCAAGTTTTT GAGCCTGTCG
AATGCAGATA TCAATGAGTG GCAGGCATTA CTTTCGAGCA TACACGATAG TAATCAAGGC
TTTAAAACAA TGCTGATTGC AAATGAACAA GGCAACTTAC TCGCTGCCAG TCCAATGGCC
AATATAGTTG AGTTAGATCG CCTAGCAGAA ATCCCTTCTG TGATGGATAG GGAATATTTT
GTCCAAGCGT TTTATAACCA TAAAACCTTT GTATCACCCG CGTTTATCGG CAGAGGTTTT
GGTAATGACG TGATCGTTGC CATTAGTGCC CCGATTTTTA GTCAAATTGA TCCCAATCAA
GCCAGAGGGA TAGTCGAAGG CAGCTTAGAT TTACGCTATT TTTCCAGCAT AGATAAACAA
AACCTGCACC ATGAGCAGCA ATCTATTTTG CTGACAGATG AGAACAATAA TCTGATTTAT
GCCTCCGAAG GGTTAGGACT AGCACCGCTC ACCCCCTTGT CATTCAGCAA AGGCAGTGAG
ATTTATCGCG CCCGGCTTCA ACTGATGAAC CTGCATAACC TAGATTCAAA TACTCCTGAG
TACATCTATG CCCAGCATAA GTTAAACAAT GGTTGGCAAC TCTATGTTTT AGAACCTTTT
GTGCCGCTTT TAAAACTGGC TGAACGCCAA TATGTCAACA CGGTAATTTT GCTGTTTTGC
TCCTTAGTCG GTGCCTTTTT TATTACTAAA GCCATCAGTA AGTTACTGAC CGAACCTCTG
TCGCTTTTAG CGCAGCATTT CGGTCCCGCT AAGCAAGAAA AAGCCAGTGA CGAGAAGTTT
GAGCATGATC TACTCGATAA AAGCACCCCT AAAGAAATCT ATAGCTTGTA TGAAAGTTTG
GCCTCGAACC AACAAGCCTT ACTCGAACAC CAACAAGAAC TTGAACAAAA AGTACAACAG
CGCACCCAAG ATTTAGAGGC CGCTAATGTG AAATTAAAGG ATTTAGCCGA GCGCGATCCG
CTGACGAATC TCTATAATCG CCGCTATACC GAACACCAAT TCCCACTTAT CCAACAGATG
TGCGAACGGG GTCAAGATGC CATGACACTT GCCATATTGG ACTTAGACCA TTTTAAGCAA
ATCAATGATA CTTATGGCCA TTTGGGCGGC GACGAGTGTT TAAAAGTGGT TGCTGAACTC
TTAACCTCGC TCTTCAAGCG AGATATTGAT TTGATCTCCC GCTACGGCGG CGAGGAATTT
TTGCTGATTT TACCTATGTG TAATGCCTTG AAAGTTGAAG CACATCTCAA TGAGTTTAAA
CGGCAGCTCG CAGGTACAGT GATCATCAAT CCGCAGGATC ATCGAAGCTT CAAGGTCACG
GCGAGTATCG GCGCTGTGAT TGCCAATGCC ACCTATAGCG ACTCCTTAGA GTACTGGCTT
AAACAGGCCG ACAATAACTT GTATCTGGCA AAGGAACAGG GACGTGATCG GGTTGTTTGC
AGCCTGATTG TTTAA
|
|---|
| Protein sequence | MCHNHRQLTQ ANFQRDFSLH LPAFQTAHLR LAIILGVFGL VLNLFPIPLF ANVQLILGNV
AVVIVAILLG PWYALITALF TATGLMIVWS SPHVYLLFLL EALWLGFARR RDIQILYASV
SYWVLLGIPL LAIYVAVIAK MPASHIPFTA IKQAVNGMIY AAIGELCVVA IPSLWYFKGK
LTNLNRRTFS SQLSYLFTLI ITVSLLVSSL AFNHFFIDKQ QMMINRNLDD TATHLSHATD
NYLAYNTQVI ASTAKFLSLS NADINEWQAL LSSIHDSNQG FKTMLIANEQ GNLLAASPMA
NIVELDRLAE IPSVMDREYF VQAFYNHKTF VSPAFIGRGF GNDVIVAISA PIFSQIDPNQ
ARGIVEGSLD LRYFSSIDKQ NLHHEQQSIL LTDENNNLIY ASEGLGLAPL TPLSFSKGSE
IYRARLQLMN LHNLDSNTPE YIYAQHKLNN GWQLYVLEPF VPLLKLAERQ YVNTVILLFC
SLVGAFFITK AISKLLTEPL SLLAQHFGPA KQEKASDEKF EHDLLDKSTP KEIYSLYESL
ASNQQALLEH QQELEQKVQQ RTQDLEAANV KLKDLAERDP LTNLYNRRYT EHQFPLIQQM
CERGQDAMTL AILDLDHFKQ INDTYGHLGG DECLKVVAEL LTSLFKRDID LISRYGGEEF
LLILPMCNAL KVEAHLNEFK RQLAGTVIIN PQDHRSFKVT ASIGAVIANA TYSDSLEYWL
KQADNNLYLA KEQGRDRVVC SLIV
|
|---|
| |