| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1749 |
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| Symbol | |
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| ID | 7088283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | - |
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| Start bp | 2058932 |
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| End bp | 2059594 |
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| Gene Length | 663 bp |
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| Protein Length | 220 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 643460653 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_002357677 |
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| Protein GI | 217972926 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.170067 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00382347 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAAAATA TTCAATCACA AAGCAGGCAA AATCGGTATC ATGGCCCTAT CACGTCTCTG
ACTCATTCGG CTATGGATAA CGACATTCCC GCTCTCAAAA CCTGCGAGCC TCAAGCGGAT
ACTTTGATCA CGTTTATGCT ACAAGTAGCA GACAAACGAG ACAGGGCCGC CTTTGGGCAT
TTATTCCAGC ATTTTATGCC CAAGATCCGC GCCTTTGGTT TACAAAGACT GAATCAACAA
GGCTTAGCCA TGGATTTAGT TCAAGAAACC ATGACCAGCG TGTGGACTAA GGCCCATCTG
TACAATGCAG AGAAAGGCTC AGTGACGACT TGGGTATTTA CCATAATGCG TAATCAGTGT
TTCGATATGC TGAGACGAGT ACAACACAAT AAAGAAGATA CCTTTGGCGA TGATATTTGG
CCGCTGTGCG ATGCGACCAT GGCTCAAGAC ACACTCACTG ATCATAAATT GACGGCGAAA
CTCCTCCAAC ATCTTGATGC CCTTCCCCTA GCACAAAGAC AAGTCGTGCA AGGTATCTAC
ATGCAAGAAC TCACTCAACA AGAGCTAGCC GATGCCCTCA AGGTGCCAAT AGGCACCATA
AAGTCACGAT TAAGACTCGG GCTAGAAAAG TTGAAAAGTT TCTTGGAGAC ACACAATGAT
TAA
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| Protein sequence | MENIQSQSRQ NRYHGPITSL THSAMDNDIP ALKTCEPQAD TLITFMLQVA DKRDRAAFGH
LFQHFMPKIR AFGLQRLNQQ GLAMDLVQET MTSVWTKAHL YNAEKGSVTT WVFTIMRNQC
FDMLRRVQHN KEDTFGDDIW PLCDATMAQD TLTDHKLTAK LLQHLDALPL AQRQVVQGIY
MQELTQQELA DALKVPIGTI KSRLRLGLEK LKSFLETHND
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