| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1731 |
|---|
| Symbol | |
|---|
| ID | 7088265 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 2041449 |
|---|
| End bp | 2042489 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 643460635 |
|---|
| Product | 4-hydroxyphenylpyruvate dioxygenase |
|---|
| Protein accession | YP_002357659 |
|---|
| Protein GI | 217972908 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
|---|
| TIGRFAM ID | [TIGR01263] 4-hydroxyphenylpyruvate dioxygenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00206644 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGCG AACTAAATCC ACTAGGCTTA TTAGGTATCG AATTCACTGA ATTCGCCAGC
CCTGATACTG ATTTTATGCA CAAAGTCTTT ATCGACTTTG GTTTTTCACT GCTGAAAAAA
GCCAAGAACA AAAACATTCT GTACTACAAA CAGAATGACA TTAATTTTCT GCTCAACACT
GAGCGCGAAG GTTTCTCAGC TAAGTTTGCT AAATCCCACG GTCCAGCCAT TTGTTCTATG
GGCTGGCGGG TAGAAGATGC TGGCTTTGCC TATCGCGTTG CCGTTGAACG TGGTGCAAAA
CCCGCCGATG ATGCCAATAA AGATCTGCCT TATCCTGCGA TTTACGGCAT TGGCGACAGC
TTGATTTATT TCATCGACAC CTTTGGCGCA GAAGACAATA TCTATGCTGC TGATTTTGAA
GACTTAGATG AGCAAGTCAT CACCCAAGAG AAAGGCTTTA TCGAAGTCGA TCACTTAACC
AACAACGTCT ACAAAGGCAC AATGGAACAT TGGGCTAACT TCTATAAAAA CATTTTTGGT
TTTACTGAAG TGCGCTACTT TGACATCAGC GGCGTACAAA CTGCGCTAGT GTCATACGCC
CTGCGTTCGC CCGATGGCAG CTTCTGTATT CCGATTAACG AAGGTAAAGG CAGCGATAAG
AACCAAATCG ATGAATACCT GAAGGAATAC AATGGCCCAG GTGTGCAACA TTTAGCCTTT
AGAAGCCGCG ATATCGTAAA ATCTCTGGAT GCGATGGAAG GCAGTTCAAT CCAATGCTTA
GACATTATCC CTGAATACTA CGACACCATA TTTGAGAAGT TGCCTCAAGT GACTGAGAAT
CGTGAACGCA TCAAACATCA CCAAATTTTG GTAGATGGCG ATGAATCCGG TTATTTACTG
CAGATTTTCA CTAAAAACCT GTTCGGACCG ATTTTTATCG AAATAATCCA ACGCAAAAAT
AACTTAGGTT TTGGTGAAGG CAACTTTACT GCCCTGTTTG AATCGATTGA ACGGGATCAA
ATGCGCCGCG GCGTACTGTA A
|
|---|
| Protein sequence | MASELNPLGL LGIEFTEFAS PDTDFMHKVF IDFGFSLLKK AKNKNILYYK QNDINFLLNT
EREGFSAKFA KSHGPAICSM GWRVEDAGFA YRVAVERGAK PADDANKDLP YPAIYGIGDS
LIYFIDTFGA EDNIYAADFE DLDEQVITQE KGFIEVDHLT NNVYKGTMEH WANFYKNIFG
FTEVRYFDIS GVQTALVSYA LRSPDGSFCI PINEGKGSDK NQIDEYLKEY NGPGVQHLAF
RSRDIVKSLD AMEGSSIQCL DIIPEYYDTI FEKLPQVTEN RERIKHHQIL VDGDESGYLL
QIFTKNLFGP IFIEIIQRKN NLGFGEGNFT ALFESIERDQ MRRGVL
|
|---|
| |