| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1616 |
|---|
| Symbol | |
|---|
| ID | 7090017 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | + |
|---|
| Start bp | 1892643 |
|---|
| End bp | 1896089 |
|---|
| Gene Length | 3447 bp |
|---|
| Protein Length | 1148 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 643460517 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002357544 |
|---|
| Protein GI | 217972793 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain |
|---|
| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000783547 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTC GCACTTCGTA TCTTGTGGGT CTAATGGCCA CTGTTTTAGC TGTTTCTTCT
ACCGCTTATT TTATTGATCC CGCCGTTGCA GCAGATACGC CAAGATTAAA ACCCTTAAAA
ATCATGGGGC CAGACGGACA GATCCGTCAA GTTAATCATC AATATGGCCC AACGACATCC
AGAGACACTT TTTGGAGCAT AGCGCAAAAA GTGCGTCCCG ATGCCAGTGT CAGCGTCTAT
CAAGTGATGG CCGCGCTATA TGATGCTAAC CCCCATGCGT TTAACTCTGC CAGCTACAAC
AGTTTAGAAC GTGGCATGAT CCTGCTGATC CCGTCTAAAG AAGTCATGCT GTCGATTCCC
AATAGTATGG CGATAGCAAG AGCAGAGCAA AGCGACAGAC AATCCCGTGC GCCAGCGAAA
GCGGTGCAGA AACCTGCAGC TAAAGTGACC ACGCAAGCGC CTGTTACTGC TCCTGTTGTG
ATTGCTGAAA CCAAAGTGAT CACTGAAACC AAAGTGACGC CGCCCAAAGT GCCAGTGGTA
GAAACACCGG CGCCAGACAA GCCTAAGATG CTGAGCTCTG ATGTAACGTC GCGCTTAGAA
GCAGCTGAAA GTAAAAATCT GTCATTAACC GATGAATTAG CTCGCACCCA AGATCAACTC
ACTGTCCGCA CTTCAGATGT TGAAGCGCTA AAAGTGAAAG TTGAAGAATT GAATCAACGC
ATTGCCGTGC TAGAAGAAAC CCTGCAAGCC AGCAAACTGC AAAATCAAGC TTTGAAAGCT
GAAGTTGAAG CTGCCCAAAC GCCAGAGATG ACAACGGGAA CGGCTGAAGC TGAGACTCAG
GCTCCCGCTG AGCCCGATGA TTTATGGCGT AATATCCTTA ATAGTCCAGT GTTAATGATT
GCTGCCGCTG TGATCCCTGC CTTGTTCTTG TTACTGGCAG TGTTCTGGTT GCTGCGCCGT
AAACGTAATA AAGAACGTCG TGAAATGCAG GCGCAAGAAG CGGTTATGGC CGCGGGTGCT
GCTGGCGTTG CCGGTACTGC CATCATGGAC ATGGATGATG ACGACTTAGA TGATATGGCG
GTGCATTTAG ATACCGACCA TGCGGACTCT ATCGATAGCC TGCTTGATAT GGGCAGCGTC
GATTTACAAC CTGAGCAAGA TTTGACTGAC TCAAACGATC AGATGGATAT GGCGTCTGAA
ATGTTTGTCG ATCCGGGTCT CTCTGCCGAA GCTGAGGTTG AAGACGAAGG GCAATCTCTT
GATGACCTGT GGGCCGAAGC CATGGGCGAT CAGGAAGAGG ATATTGTTGA GGAAAAACCT
AAATCTGACA ATATTCTTGA GGAAGCCGAT CTCGATGCGC TATTAGCGGG CCTAGGTTCA
GAAGACAATA CTTCAGAAGA CAACACTGAA GCTGAAGACG ATTTAAGTGA ATTAGAGCGA
AACTTTGCTA GCGATTTAGC TGAAGAAGAC GTTGAAGTAG AAGATACTCA ACCTGCCAAT
GAAGCCGTCG CTGATGACGA TGATCTCGAT GCCTTACTTG CCGAGTTTAG TGTTCCTGCT
GAAGATCCAG AAACGGCAAA AGAACCTGCA ACAGAATCTA TTGAGTCTGA CGATGAAGAT
CTCAGTGCCG CCATCGCCGC AGAACTCGAT GATGAGCTAG ATGATGAACT GGGCGGAGAA
GAGGTTGATG ATATCGATGC TCTATTGGCC GATTTCGATA AACCAACGCC AACCGCAGAA
CCTGAAGTCG AATCTGATCT TGGCGCTGAA ATTGCTGCCG AGTTAGATGC CGAACTTGAT
GAGCTGGGCG TAGAAGATAC CGACGACATC GATGCCTTGT TAGCAGATTT CGATAAACCA
GCAGAACCTG AAGTTGAGCC TGATCTTGGC GCTGAAATTG CCGCCGAGTT AGACGCCGAG
CTTGATGAGC TGGGCGTAGA AGATACCGAC GACATCGATG CCTTGTTAGC AGATTTCGAT
AAACCAGCAG AACCTGAAGT TGAGCCTGAT CTTGGCGCTG AAATTGCCGC CGAGTTAGAC
GCAGAGCTGG ATGAACTGGG CGTAGAAGAC ACTGACGATA TCGATGCGCT GTTAGCTGAT
TTCGATAAAC CAGCAGAACC CGAAGTTGAA CCCGATCTTG GTGCTGAAAT CGCCGCCGAG
TTAGACGATG AACTGGATGA ATTAGGCGTA GATGAATCCG ATGATATTGA TTCGTTGCTG
GCGAGTTTTG ATGCTGAGCC TGAAATCAAA GTTGATGCTG AAGACAATGC CGAAAACGAT
ACCGAAGATG ATGCGATCAG TGCAGAAATT GCCGCAGAGC TAGAAGCTTC GTTACCGGAA
GATATCAAGG GCGAAGCGTC AGGCGATGAA GATTTAGATG CGCTGTTAGC TGAATTTGAT
GTGCCAGAGC AACTCGATGC CGATGAAGAT GAATTCGACT TCGATATGGA AACGGCGCAG
CTTGATGCGG ACGATAACGC CACAGATGAA GACAATTTAC TCAAAGGTAT TGGTGCGTCT
CACTCGATTG ACGGCACTGA TGATACTTTC TCGTTAGTCG AAGAGTTGGG TGAAGATGAT
GATTCTGACG CCCTGACTAC GGCTGCAGCC ACTTTGGCCG CCGCTACCGC CGCAGCGAGT
GTTAAGGAAA AAGAGTCTTC TTTCTTTAAT GATTTAAAAG CCAATAAGAG CAAAGATCCC
CACGTGCTCG ATTGGGACTC AGAGCTTGAT TTTGCGCCTA AGGCCAAGCC TGCTGCGACG
CCAGCTGATG CCGCCGCTGA AACGGATGTC GAGCCTAATG CCGATGCTTC GCTAGCTGAT
ACGACGGCTC CGGATGATGC GACTCAAGAT AAGCCGATTA AGGCGACGCG TAACGATGTT
GATTTTAGTG AAGATTTTAA ACTCGATACC CAAGAGGATG CTGACGATTC TGAGCAAGGC
CTCGATTTAA GCGACGATAA TGTACTCGCT GCTTTCACGG CCAATACCGA TTTTGATGAC
GATGAAGATG TACTGACGTC GGAAGACAGT TTCTCACTCG TCGATGATCT CACTGTCGAC
GAAGCGTTAG CTGCACTCGA TGCTCAAGAG TCGCGTAAAG CACAGAAGAA GTTTGTTCCT
GAGCATGATT TAACGAATTT CCAAAATGAA AACGGCTTTA TCGACATAGA CAAGTTGTTG
AATGATGCCG ATGAAGACGG CACTGATACC GATTTGTATT CGGAAGTCGA CGTGGAAATG
AGTGATGTCG GAGCCTTAAT CGGTGATGCC GCTATGATTG ATGTCGATGA TGAAGAAAAC
TCAGTCAACG CTAAGCTGGA TTTAGCTCGC GCTTATATCG AAATTGACGA CAGCGACAGC
GCCAAAGCCC TGCTCAAAGA AGTGCAAATT GACGGTAACG AGCGCCAGCA AGATGAAGCT
GGACGTTTAC TCAAAGAGAT GAGTTAA
|
|---|
| Protein sequence | MKFRTSYLVG LMATVLAVSS TAYFIDPAVA ADTPRLKPLK IMGPDGQIRQ VNHQYGPTTS
RDTFWSIAQK VRPDASVSVY QVMAALYDAN PHAFNSASYN SLERGMILLI PSKEVMLSIP
NSMAIARAEQ SDRQSRAPAK AVQKPAAKVT TQAPVTAPVV IAETKVITET KVTPPKVPVV
ETPAPDKPKM LSSDVTSRLE AAESKNLSLT DELARTQDQL TVRTSDVEAL KVKVEELNQR
IAVLEETLQA SKLQNQALKA EVEAAQTPEM TTGTAEAETQ APAEPDDLWR NILNSPVLMI
AAAVIPALFL LLAVFWLLRR KRNKERREMQ AQEAVMAAGA AGVAGTAIMD MDDDDLDDMA
VHLDTDHADS IDSLLDMGSV DLQPEQDLTD SNDQMDMASE MFVDPGLSAE AEVEDEGQSL
DDLWAEAMGD QEEDIVEEKP KSDNILEEAD LDALLAGLGS EDNTSEDNTE AEDDLSELER
NFASDLAEED VEVEDTQPAN EAVADDDDLD ALLAEFSVPA EDPETAKEPA TESIESDDED
LSAAIAAELD DELDDELGGE EVDDIDALLA DFDKPTPTAE PEVESDLGAE IAAELDAELD
ELGVEDTDDI DALLADFDKP AEPEVEPDLG AEIAAELDAE LDELGVEDTD DIDALLADFD
KPAEPEVEPD LGAEIAAELD AELDELGVED TDDIDALLAD FDKPAEPEVE PDLGAEIAAE
LDDELDELGV DESDDIDSLL ASFDAEPEIK VDAEDNAEND TEDDAISAEI AAELEASLPE
DIKGEASGDE DLDALLAEFD VPEQLDADED EFDFDMETAQ LDADDNATDE DNLLKGIGAS
HSIDGTDDTF SLVEELGEDD DSDALTTAAA TLAAATAAAS VKEKESSFFN DLKANKSKDP
HVLDWDSELD FAPKAKPAAT PADAAAETDV EPNADASLAD TTAPDDATQD KPIKATRNDV
DFSEDFKLDT QEDADDSEQG LDLSDDNVLA AFTANTDFDD DEDVLTSEDS FSLVDDLTVD
EALAALDAQE SRKAQKKFVP EHDLTNFQNE NGFIDIDKLL NDADEDGTDT DLYSEVDVEM
SDVGALIGDA AMIDVDDEEN SVNAKLDLAR AYIEIDDSDS AKALLKEVQI DGNERQQDEA
GRLLKEMS
|
|---|
| |