Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal223_1602 |
Symbol | |
ID | 7090003 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS223 |
Kingdom | Bacteria |
Replicon accession | NC_011663 |
Strand | - |
Start bp | 1872155 |
End bp | 1876387 |
Gene Length | 4233 bp |
Protein Length | 1410 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 643460503 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_002357530 |
Protein GI | 217972779 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.583296 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00283749 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCTAAAG CACTCTTTAA AATTATTTTT CTTCTAGCTA TTTTCCTATC AACTGCAGAA GCACAACAAT TACCAATAGC TTTAAAAACT AAGTCCTATG GCGTTCCAGA AGGCCTATCC CAAAGTACAG TCACATCGAT CATTGAAGAT AATGATGGTT ACATCTGGAT TGGTACTTTG AACGGATTAA ATCGATTCGA CGGTGAAGAA TTTAAGCATT TTTTTGCACA TGATCACTCA GGTCTATCTA GTTCATTTAT TCAAAGCCTA TTATTTGACA ATAAAAAAAT GTTAGTTGGA ACTGACAATG GTTTAAATGT TTACGACTCA GAACTTGAAT CCTTCAAAAA ACAAAAAAAA ATAAATGAAG CCATATGGTC TATAAATGAC AATGGTGAAG TTTATACAAT AGGTACTAAA AACAAAATAA TTGATATTAG AAAAGATAAT TTAGAAATAA TAAAAACATA TCAAGATGAA AGCTTTAGCT TCATAAAGAA AGCAATAAAG ACCAACAACG GCTATATTAT AAGAAATCAT GATGGTAAAA TCATTCATTA TCGCGAAGAT TCAACAGCTA CTATTTTATC CCTACAATCT GTAGACATAG TAAAAGGCAG AAGTGGAATT TACATTTTAA CATCAGATGG TATTTATAAA AAAATATCTG AAGACATACC GAAGTCTCTT GCTGGTGAGT ATACAGCTCT AGCCGTGATT GATGGTCAAG TAATACAAAC AAACCTTGAA TCATCAGAGG TAACATCAAA AGGTTATGTA TTAGAAAATA AAGAAATTAC AAATCAGGTT CAAGCCTACA GAACGAATAA CTATACAATA ATACCTTCAT TAAATATGGG ATTTATTCTA ATCAGAGATA GTAGCAATGT TGTAAAGTCC CTAATAAATC CTATCGGAAA TATCTGGTCA ATAAGCTTGT TAGACAATGA ACACATTGTG ACTTCTGATG ATAGTAGCGA AGTGGAAGTA TATAATTCAA ACTTTATCCT CGAAGACAAA ATAGACACGG GAATATCAGG ACCTAAGTAT ATCATAAGAA ACAATGACTC TTTAATTATT GGGGGTAATA ATGGTCTTTA TGAGTTTAAT GGGAATTTAA AAGCAACAAT ATTAAGCGAT AGCATTGTCA CTCTATTTAA AAACCCAAAA AGAACCGAAT TAATTGTTGG AACAAACAAT TCAGACATAT ACATAATTGA TCTACTAGAT AGAAAAAAAA TTCGAAAACT ATCACTAAAA AATAAACACC CAATCTTCCA AATCCAACAG ACCTTTGATG GCACACTTCT ACTTGCTACT CAAGGTGGGT TGATAAGTAT AGATGCTAAC GGCAACGAAA AAACAATTTT CGATGATGAC TTTGTTTATT GCATAACTGA GACACCAAGT GAATATCTTT TTGGAACAAG AACTTCAATC TATTCGACTA AAAAAGAAAC GTTAGAAACT AATAAGGTTT ATAACTCAAA CAAACCAATC TACTCAATCG CAATTGATGA TAGCAATGAC TTTATGGCAT CTTCCATAAA TGAGTTGATT TTAAGCAGAA ATGGAAAATT ACTCACACTA ACAACTGACT ATGGTAGTCA AGAAGAATAC AATAATCAGA GTGGGATATT CTGGAATGGC AGTTTCTTTT TTGGTGGAAT ATCTGGTGTC AGTGCAATAA ATAAAGTTAA TGCAATATCT TATATTGAAG ACAATGTTAT AAACACTAAT ATCAGTGAGC TTTTAGTATT TAACAAAACT GTTAATATAG GCGATGAGCC ACTAGGAAAA AGTATATCGA AATCAAAATC AATTGAGTTA AAATATTCAG ACTATCCATT TACACTGAAG TTCAACTCTC CGAAGTCAAG CCATAAACAT ATTGAATACT TTTACAACCT AAATGGTCTA TCAGATACAT GGATTACTGC AAAAGGCACA AACTCTGCAA CCTACACAAA CCTCTCACCT GGTCATTATA TTTTTAATGT ATTTGGTGAG AACCCTGTCA CCGGAGTAAA AGGTCCAGTA AATTCTCTTA ATATTTATAT ATCCCCTCCG TGGTGGCTAT CTTATTGGGC AAAATTAATT TATTTCATAA CTGTTTTGCT CGTAGCTTTT TTTATTATAA AAGCTGTGTT ACGAAAAAGA GAAGTGCAAC GCCAAATAGC GCTCAGTGAA GAAAGATTAA AACTTTCCTT ATGGGGAAGT GGTGATGAAA TGTGGGACTG GGATATAGAA ACTGGCAACA TTTTCCGCTC AAATATCTGG GGAGCACTTG AATTTCCGCG TGATGGACAT CGCTCGGGTA AATCGGATGA AGAGAGTAAT ATACATCCAA TGGATCAAGA ACGTGTCCGA GAAGCGCTCA ATAAGCATTT TTATGGTGAA ACAGATCATT TCGAAGCCGC ATACCGAGTT AAAGGTAAAG ACGACAATTG GGTATGGATC TTAGACCGCG CCAAAATTGT AGAACGTGAT GACAAAGATA ATGCCCTGCG AATGACTGGA ACGATTAAGA ATATTAGTCA ATTTAAACAA AAAGAAGAGC AACTAAAACT CTTTGAAAAG GCTATTGAAA ATATTTCGGA AGGCATGTTT ATCCTAGACA GCGAATACCG CTTTGTCGAA GTTAATGAAG CTTGCTGTAA GATTTCATTA CGTAACCGAA CTGATTTTAT TGGTAACTTA CTCACATTTG ATTTATATCC TGAAACCTTC TCCACCCAAA TCAGAACCAT GCTGAAGCAA CAAGGTCGCT GGGCGAATGA AGTCGAAGCC GCCAGAGGAG ATAAAAGTCA CTTCCATATG GAGCTCACTA TCGATGCTAT CTATGATGAG TTAGGCGAAT TATCACACTA TGTCGGGGTT TTCTCGGATA TTTCGAGACG GAAACAGCAA GAAGAAGAGC TTAGAAAACT AACCAATAAT GATCTCTTAA CCGGACTCCC AAATCGCTCC AACTTACAAG TGACCTTAAG TAACCTAGTG AATCGAGAAA TAGCCCATGC GCTAATGGTG CTTGATCTTG ATAATTTTAA ACGTATTAAT GATTCCTTAG GTCACCAAAT TGGAGATACG TTATTAAAGC TCGTTGCAGC CCGCATTAAG TCCTTACTTC CTAAAAGTAC CAGTATTTAC CGTCTAGGCG GAGATGAATT CGCCATTGTA TTAGATAAAG GCTCAGATAT AAGCGCCAGC GCTGCGATTG CTAACCGTGT TATCGAAGGG TTAAAACCCG CTTTTGAAGT GAGTAATGAA CAACTAGTCC TAGGATTAAG TATTGGTATA GTGCTATTCC CAGAAGACGA GCAAAGCGAG CAAGCATTAC TGAGGAAAGC TGACATTGCT ATGTACCATG CTAAGTCAGC GGGGGGGAAT TGCTATCAGT TTTATTCAGA GTCATTAAAT CAACATGCGA TTAGGCAGTT AGAAATAGAG AATCTCATCC GTGAAGGCTT AAAAGATGAT CTATTTGAAG TTTATTATCA GCCTAAGGTT GATCTTAAGC GCGGTAAAAT TGCAGGCATG GAGGCTTTAG TCAGATTAAA TCATCCAGTA CATGGCTTGA TACCCCCAAA TGATTTTATT CCACTTGCTG AAGAAAACGG CTTAATTGTT GAAATTGGTG AAATCGTCTT ACGCAAAGCC TGTTTCGCAG CGCAGAAATG GCGTGAACAA GGAATATTCA GCGGCAGAGT CGCCGTCAAT TTATCGTCAC GTCAATTTGC ACTCCCCGAT ATTCAACAGC GAATAGAGTC AATTTTAAGG CTCACCAAAC TCCCCGCTTG TCACCTTGAA TTAGAAATAA CCGAAGGTAC TGTCATTAAG CAGCCGGAAA CGGCGATTAT TGTCATGCAG CAACTGGCTA AAATGGGCGT TAGTTTGGCA CTCGATGATT TCGGCACTGG CTACTCGTCT CTTTCATACT TAAAACGTTT CCCGATTCAT ACTTTAAAAA TTGATAAAGC TTTTGTTGAC GATATTGATA AGTCTGATCG CGATCTCAAA ATGGTCGATT CTATTATCAC TATCGCCCAT AACATGGGGC TTTCTGTTGT GGGAGAAGGG GTAGAACAAG CAGCACAATT GAACATTTTA CGGGCACTTA ACTGTGAAGA GATCCAAGGC TATATCTTTA GTAAAGCTAT AAAAGAGACC GAATTTACCC TGCTACTCCA AGAAGACATG ATAAAGCCAA ACACCAAAAG CAACATTAAT TAA
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Protein sequence | MPKALFKIIF LLAIFLSTAE AQQLPIALKT KSYGVPEGLS QSTVTSIIED NDGYIWIGTL NGLNRFDGEE FKHFFAHDHS GLSSSFIQSL LFDNKKMLVG TDNGLNVYDS ELESFKKQKK INEAIWSIND NGEVYTIGTK NKIIDIRKDN LEIIKTYQDE SFSFIKKAIK TNNGYIIRNH DGKIIHYRED STATILSLQS VDIVKGRSGI YILTSDGIYK KISEDIPKSL AGEYTALAVI DGQVIQTNLE SSEVTSKGYV LENKEITNQV QAYRTNNYTI IPSLNMGFIL IRDSSNVVKS LINPIGNIWS ISLLDNEHIV TSDDSSEVEV YNSNFILEDK IDTGISGPKY IIRNNDSLII GGNNGLYEFN GNLKATILSD SIVTLFKNPK RTELIVGTNN SDIYIIDLLD RKKIRKLSLK NKHPIFQIQQ TFDGTLLLAT QGGLISIDAN GNEKTIFDDD FVYCITETPS EYLFGTRTSI YSTKKETLET NKVYNSNKPI YSIAIDDSND FMASSINELI LSRNGKLLTL TTDYGSQEEY NNQSGIFWNG SFFFGGISGV SAINKVNAIS YIEDNVINTN ISELLVFNKT VNIGDEPLGK SISKSKSIEL KYSDYPFTLK FNSPKSSHKH IEYFYNLNGL SDTWITAKGT NSATYTNLSP GHYIFNVFGE NPVTGVKGPV NSLNIYISPP WWLSYWAKLI YFITVLLVAF FIIKAVLRKR EVQRQIALSE ERLKLSLWGS GDEMWDWDIE TGNIFRSNIW GALEFPRDGH RSGKSDEESN IHPMDQERVR EALNKHFYGE TDHFEAAYRV KGKDDNWVWI LDRAKIVERD DKDNALRMTG TIKNISQFKQ KEEQLKLFEK AIENISEGMF ILDSEYRFVE VNEACCKISL RNRTDFIGNL LTFDLYPETF STQIRTMLKQ QGRWANEVEA ARGDKSHFHM ELTIDAIYDE LGELSHYVGV FSDISRRKQQ EEELRKLTNN DLLTGLPNRS NLQVTLSNLV NREIAHALMV LDLDNFKRIN DSLGHQIGDT LLKLVAARIK SLLPKSTSIY RLGGDEFAIV LDKGSDISAS AAIANRVIEG LKPAFEVSNE QLVLGLSIGI VLFPEDEQSE QALLRKADIA MYHAKSAGGN CYQFYSESLN QHAIRQLEIE NLIREGLKDD LFEVYYQPKV DLKRGKIAGM EALVRLNHPV HGLIPPNDFI PLAEENGLIV EIGEIVLRKA CFAAQKWREQ GIFSGRVAVN LSSRQFALPD IQQRIESILR LTKLPACHLE LEITEGTVIK QPETAIIVMQ QLAKMGVSLA LDDFGTGYSS LSYLKRFPIH TLKIDKAFVD DIDKSDRDLK MVDSIITIAH NMGLSVVGEG VEQAAQLNIL RALNCEEIQG YIFSKAIKET EFTLLLQEDM IKPNTKSNIN
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