| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1572 |
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| Symbol | secD |
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| ID | 7089973 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | + |
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| Start bp | 1838338 |
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| End bp | 1840188 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 643460473 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_002357500 |
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| Protein GI | 217972749 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000232578 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000015395 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGTTAAATA AATACCCAAT GTGGAAAAAC ATTATGGTGA TGCTCGTCAT CGCCATAGGT
TGTTTCTATG CCGTACCGAA CCTTTTTGGT GAAGATCACG CGGTGCAAGT GGTGGCGACT
CGAGGTGCTG AAGTCACAGC ATCAACCCAA GCCAGTGTGA ACGAGCTGTT AGCCAGTAAG
GGCATTGCGG TAAAGCGCTC TGAGCTTGAA AAAGGTCAGT TGTTGGTCCG TGTGCAAAAT
GCGGATCAAC AGCTACTGGC GAAAGAATTA ATTGCTGACA GCTTAGGTGA CAAGTTCACT
GTGGCGCTCA ACTTAGCCCC AGCGACGCCT AAATTGCTCG AGTCAATGGG CGGCAGCCCA
ATGAAACTCG GTCTCGACCT TCGCGGCGGT GTGCATTTCT TAATGGAAGT GGACATGGGT
GAAGCGATTC GCAAGATGGA AGAGGCTAAA GTTGCCGATT TCCGTTCGCA ACTGCGCGAA
GAGAAAATTC GTTATGCCGG TATTCGTACT AATACCACAG GTATCGAAAT CAAGTTCCGT
GATGCTGAAA GTCTCGCGAG TGCCGAGCGT TTCCTTAAGT CTCGCAGTAA AGATATGGTG
TTCACTGATG CTAGCCGTGG CGAAGATTTT GCCCTGCAAG CTGTGATGAG TGACGTGTAC
CTTAAGCAGA TTAAAGAAGA AGCACTGCAA CAAAACATTA CGACCATTCG TAACCGTGTA
AACGAGTTAG GTGTGGCTGA GCCTGTAGTA CAACGTCAAG GCGCCGAGCG CATTATCGTT
GAGCTGCCAG GTGTGCAAGA TACGGCTCGC GCCAAGGAAA TTTTAGGTGC AACCGCATCG
ATTGAATTCC ACATGGTCGA TGACAAAGCC GATCCTAATG CTGCGCAATC TGGCCGTTTA
CCTGCAGGTT CTGAAGTGTA CCAGCGCCGC GAAGGTGGCA CTGTGATATT GAAGAAAGAA
GTTATGCTGA CCGGTGATCA TATCACGGGC GCACAACCTA GCTTTGACCA GTACAGTCGT
CCACAGGTTA GCATCAACCT TGATGCGAAA GGCGGCACCA TTTTCTCTGA CGTGACCAAA
GACAACATAG GCAAGCCTAT GGCGACATTG TTCATCGAAT ATAAAGACAG TGGTGAGCGC
AATGCCGACG GCAGCGTTAA GATGCAGAAA ATCCAAGAAG TGATTTCTGT TGCGACCATT
CAAGCGCGTT TAGGCCGTAA CTTTGTGATC ACTGGCTTAA GCCATGGTGA AGCACAAAAC
CTCGCGCTAT TACTGCGTGC TGGTGCCTTG ATTGCCCCAG TGTCGATTGT TGAAGAACGT
ACCATTGGTC CAAGCTTAGG TGCTGAAAAC ATTCAAAACG GTGTGCAAGC TATGGTCTGG
GGTATGGCAG TTGTCTTACT CTTTATGCTG GTTTACTACC GTGGTTTTGG TCTTATCGCC
AACATAGCGT TAACCGCAAA CTTAGTCATG GTAGTAGGCG TAATGTCTAT GATCCCTGGC
GCAGTGTTAA CCCTACCGGG TATTGCCGGT ATGGTGTTGA CTGTGGGTAT GGCGGTTGAC
GGTAACGTGC TGATCTATGA GCGTATCCGT GAAGAATTAC GTGCGGGCCG TAGCGTCCAG
CAGGCCATCC ATGAAGGTTA TGGCAACGCA TTCTCCACCA TCGCCGATGC GAACATCACC
ACTTTCCTAA CGGCGCTGAT TCTATTTGCC GTAGGTACGG GCGCTGTTAA AGGCTTCGCG
GTGACCTTGA TGATAGGTAT TGCGACTTCC ATGTTTACCG CAATCGTGGG TACTCGCTCA
ATCGTTAACG CGATTTGGGG TGGTAAGCGC GTGAAGACTC TGTCTATCTA A
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| Protein sequence | MLNKYPMWKN IMVMLVIAIG CFYAVPNLFG EDHAVQVVAT RGAEVTASTQ ASVNELLASK
GIAVKRSELE KGQLLVRVQN ADQQLLAKEL IADSLGDKFT VALNLAPATP KLLESMGGSP
MKLGLDLRGG VHFLMEVDMG EAIRKMEEAK VADFRSQLRE EKIRYAGIRT NTTGIEIKFR
DAESLASAER FLKSRSKDMV FTDASRGEDF ALQAVMSDVY LKQIKEEALQ QNITTIRNRV
NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKEILGATAS IEFHMVDDKA DPNAAQSGRL
PAGSEVYQRR EGGTVILKKE VMLTGDHITG AQPSFDQYSR PQVSINLDAK GGTIFSDVTK
DNIGKPMATL FIEYKDSGER NADGSVKMQK IQEVISVATI QARLGRNFVI TGLSHGEAQN
LALLLRAGAL IAPVSIVEER TIGPSLGAEN IQNGVQAMVW GMAVVLLFML VYYRGFGLIA
NIALTANLVM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EELRAGRSVQ
QAIHEGYGNA FSTIADANIT TFLTALILFA VGTGAVKGFA VTLMIGIATS MFTAIVGTRS
IVNAIWGGKR VKTLSI
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