| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1494 |
|---|
| Symbol | |
|---|
| ID | 7088184 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | + |
|---|
| Start bp | 1742088 |
|---|
| End bp | 1742627 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 643460395 |
|---|
| Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| Protein accession | YP_002357422 |
|---|
| Protein GI | 217972671 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
|---|
| TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.348293 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.609216 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATGTA GCGCAACTGA GTTAGCCGAA GTGCTGGTGT TTGAACCGCA AGTCTTTGGG
GATGAACGCG GTTTCTTTAT GGAGACGTTT AGGCAATCCT ATTTTGATGC CTGCTTTGCA
CAGCGGGGAT TCGAGTCATT TGTGTTTGTG CAGGAGAATC ATAGTCGCTC ACAACGTAAT
GTCCTGCGAG GCTTGCATTT TCAACGGCGT AAACCGCAGG GGAAATTAGT GCGAGTTTGT
GCAGGGAGCA TTTTTGATGT GGCCGTCGAT ATAAGGGCCG ACTCGGCCAC CTATGGGAAA
TGGGTTGGGC GAGTGCTATC GGCAGAGAAT CATCTGCAAA TGTGGATCCC ACCGGGCTTT
GCTCACGGTT TTTATGTTCT CAGTGATTAT GCTGATGTTA TTTATCAATG TACCCAATAC
TATGCTCCTG AAGATGAAGG CGTTGTCGCT TGGAACAGTG CTGAGTTTGC CATTGATTGG
CCATTAATTG CCGCACCGAT TTTATCCACG CGAGATAGCC TCGCCAGTAC ACCATCATAA
|
|---|
| Protein sequence | MKCSATELAE VLVFEPQVFG DERGFFMETF RQSYFDACFA QRGFESFVFV QENHSRSQRN
VLRGLHFQRR KPQGKLVRVC AGSIFDVAVD IRADSATYGK WVGRVLSAEN HLQMWIPPGF
AHGFYVLSDY ADVIYQCTQY YAPEDEGVVA WNSAEFAIDW PLIAAPILST RDSLASTPS
|
|---|
| |