| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1340 |
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| Symbol | |
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| ID | 7088765 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | + |
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| Start bp | 1572245 |
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| End bp | 1573357 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 643460244 |
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| Product | twitching motility protein |
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| Protein accession | YP_002357271 |
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| Protein GI | 217972520 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0289531 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000000718635 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATGTTC TTCCGTTTTT AAAAGTGATC GTTGAGCGCA AAGCCTCTGA CTTGTTCATC
ACAGCTGGCT TTCCGCCAAG TGCCAAGATT GACGGTGAAT TGCGTCCCTT GGCCGAAAGT
GCCTTTACTC CGGCACAATC ACTGGATTTT GTTGAATCCT TAATGACCGA AGCGCAGAAA
CAAGAGTTTC ATTCGAGTCG TGAGTGTAAC TTTGCTTTTG CGGCAAAGGA TTTAGGTCGT
TTTCGGGTGA GCGCCTTCTG GCAGCGTGAA TCGTCAGGCT GCGTGATGCG CCGTATCGAA
ACTAAAATCC CTGACGTCGA TGATTTAAAA CTGCCACCTA TTCTGAAAGA TCTGGTGATG
AGTAAACGTG GCCTCATCAT TATGGTGGGC GGAACGGGTA CGGGTAAGTC AACATCTCTG
GCGGCCTTGG TGGGATATCG TAATGGTCAT GCTCGTGGTC ATATTCTCAC GATTGAAGAT
CCGGTCGAAT TCGTTCACGA CCACAGAAAA AGCATTATCA CCCAGCGTGA AGTGGGCATA
GATACTGAGT CTTTTGATGC GGCGCTAAAA AGCTCCCTTC GCCAAGCACC CGATGTGATC
TTGATTGGTG AAATTCGTAC CCAAGAGACG ATGGAGTTCG CCCTGTCGTT TGCGGAAACG
GGCCACCTCT GTATGGCAAC CTTGCATGCC AACAACGCCA ACCAAGCATT AGACCGCATT
ATGCACCTCG TGCCTGAGAG TAAACATCAA CAGTTATTGT TCGATTTGTC ATTGAATTTA
CGCGGGATTG TGGCGCAGCA ATTGATCCCA AAAGTCGATG GCACTGGGCG TCGCGCCGCG
ATTGAAGTAT TGATCAACAC CCCAAGGGTG GCGAGTTTAA TTGCGAAGAA CGAGCTGCAT
TTGCTCAAAG AAACCATGGC CAAATCGAAT GAGCAGGGCA TGCAGACGTT CGATCAAGCC
TTGCTCAAAC TTTATGTCGA TGGCGAGATT AGTTACGCCG ATGCGCTGCA CCATGCTGAT
TCACCGAACG ATTTACGTTT GATGATTAAA TTGCAGAATA AAGAATCCAC GGGCTCAGGT
TTTATGGAAG GTGTCACCTT AGACATGGAC TAA
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| Protein sequence | MDVLPFLKVI VERKASDLFI TAGFPPSAKI DGELRPLAES AFTPAQSLDF VESLMTEAQK
QEFHSSRECN FAFAAKDLGR FRVSAFWQRE SSGCVMRRIE TKIPDVDDLK LPPILKDLVM
SKRGLIIMVG GTGTGKSTSL AALVGYRNGH ARGHILTIED PVEFVHDHRK SIITQREVGI
DTESFDAALK SSLRQAPDVI LIGEIRTQET MEFALSFAET GHLCMATLHA NNANQALDRI
MHLVPESKHQ QLLFDLSLNL RGIVAQQLIP KVDGTGRRAA IEVLINTPRV ASLIAKNELH
LLKETMAKSN EQGMQTFDQA LLKLYVDGEI SYADALHHAD SPNDLRLMIK LQNKESTGSG
FMEGVTLDMD
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